View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_low_6 (Length: 313)
Name: NF7948_low_6
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 29280463 - 29280761
Alignment:
| Q |
1 |
aaaagccagaagaagagaaaaaggaagagcctaaaccaccagaaccatgtgtgctttttgtggatttgcattgtgttggatgtgcaaagaagattcaaag |
100 |
Q |
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| T |
29280463 |
aaaagccagaagaagagaaaaaggaagagcctaaaccaccagaaccatgtgtactttttgtggatttgcattgtgttggatgtgcaaagaagattcaaag |
29280562 |
T |
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| Q |
101 |
atcaataatgaaaatgagaggtacatgtttggttacatttttctctagtattttagttaccaaatgtcatgcatgcatcatgtgtactcattttctttta |
200 |
Q |
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| T |
29280563 |
atctataatgaaaatgagaggtacatgtttggttacatttttgtctagttttttagttaccaaatgtcatgcatgcatcatgtgtactcattttctttta |
29280662 |
T |
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| Q |
201 |
tgtttatcttttaacaggagttgagggagtagttattgacatggctaaaaatgaagttaccataaaaggtatagtggagcctcaagctatatgcaatac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29280663 |
tgtttatcttttaacaggagttgagggagtagttattgacatggctaaaaatgaagttaccataaaaggtatagtggagcctcaagctatatgcaatac |
29280761 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 42525834 - 42525741
Alignment:
| Q |
191 |
ttttcttttatgtttatcttttaacaggagttgagggagtagttattgacatggctaaaaatgaagttaccataaaaggtatagtggagcctcaag |
286 |
Q |
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||||| ||| |||||||||| |||||||||||||||||| || ||||| ||||||||||||||||| |||||| || |||||||| ||||||| |
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| T |
42525834 |
ttttcatttttgtttatctt--aacaggagttgagggagtggtgattgatatggctaaaaatgaagtggtcataaagggaatagtggatcctcaag |
42525741 |
T |
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