View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7948_low_7 (Length: 306)
Name: NF7948_low_7
Description: NF7948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7948_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 290
Target Start/End: Original strand, 52132979 - 52133153
Alignment:
| Q |
115 |
tgaagtaaggataagaacaatacactaacaaccacatttaaggaaaattaatcattccgaatgaagtagaaagcatctagcaaaatcagaaagcaacgag |
214 |
Q |
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| T |
52132979 |
tgaagtaaagataagaacaacacagtaggaaccacatttaagcaaaataaatccttccgaatgaagcagaaaccatcgaacaaaatcagaaagcaacgac |
52133078 |
T |
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| Q |
215 |
cacataataaaaaccaaaatacattgacatctcaagagtttaaatacttaaaaacagaaaataaaatacttcttca |
290 |
Q |
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| T |
52133079 |
cacattataaaaaccaaaatacattgacctcttaagagtttaaagactt-aaaacaaaacataaaatacttcttca |
52133153 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 52132714 - 52132782
Alignment:
| Q |
5 |
aaaattgacgtcgatgaaatatttaatttttaattaggataaattttcaataaattttgcgaaagtctaatt |
76 |
Q |
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| T |
52132714 |
aaaattgacgtccatgaaatatttaattt---attaggataaattttcaataaattttgcgaaagtttaatt |
52132782 |
T |
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