View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7949_high_10 (Length: 414)

Name: NF7949_high_10
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7949_high_10
NF7949_high_10
[»] chr4 (4 HSPs)
chr4 (15-393)||(2873951-2874328)
chr4 (160-391)||(2900644-2900875)
chr4 (160-370)||(2884089-2884299)
chr4 (282-328)||(51046642-51046688)
[»] chr2 (3 HSPs)
chr2 (150-353)||(44213379-44213582)
chr2 (160-353)||(44225540-44225733)
chr2 (160-353)||(44236354-44236546)
[»] chr7 (8 HSPs)
chr7 (245-334)||(39567615-39567704)
chr7 (245-353)||(39360711-39360819)
chr7 (252-334)||(39334909-39334991)
chr7 (252-334)||(39346167-39346249)
chr7 (252-334)||(39550822-39550904)
chr7 (252-334)||(39541564-39541646)
chr7 (256-328)||(42135748-42135820)
chr7 (279-337)||(39577419-39577477)
[»] chr8 (1 HSPs)
chr8 (276-336)||(4497929-4497989)


Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 2873951 - 2874328
Alignment:
Q  15 ataatactattataaagttctcttatactagaaaagttaaattactctcgaaaaattagagaaagatcgaaaaaattagattagtcttcaattttgacgt 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873951 ataatactatt-taaagttctcttatactagaaaagttaaattactctcgaaaaattagagaaagatcgaaaaaattagattagtcttcaattttgacgt 2874049  T
Q  115 ttctaagacttcatttttcacctctaatttttctattgcagatactggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtat 214  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874050 ttctaacacttcatttttcacctctaatttttctattgcagatattggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtat 2874149  T
Q  215 ctccggtggacaaagaaagagacttaccacaggagaaatgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttcc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874150 ctccggtggacaaagaaagagacttaccacaggagaaatgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttcc 2874249  T
Q  315 acagcttttcaaattgtgaaatctcttaggcaatatgtttatattcttcatggaactgcacttatctcattgcttcagc 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874250 acagcttttcaaattgtgaaatctcttaggcaatatgtttatattcttcatggaactgcacttatctcattgcttcagc 2874328  T

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Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 160 - 391
Target Start/End: Complemental strand, 2900875 - 2900644
Alignment:
Q  160 tggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggagaaatgttggt 259  Q
    ||||||||||| ||||||||||||| ||||| ||  ||||||||   |||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  2900875 tggggttggatgtatgtgctgatactatggtggggaatgaaatgttacgtggtatctccggaggacaaagaaagcgagttaccacaggagaaatgttggt 2900776  T
Q  260 tggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttaggcaatatgtttatatt 359  Q
    ||||||| | || | | ||||||||||||||||||| |||||||| || ||||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  2900775 tggaccagcaaatgctttattcatggatgaaatatctactggcttggacagttccacaactttccaaattgtgaaatctcttaggcaatatgttcatatt 2900676  T
Q  360 cttcatggaactgcacttatctcattgcttca 391  Q
    ||| ||||||||||| ||||||| ||||||||    
T  2900675 cttaatggaactgcagttatctctttgcttca 2900644  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 370
Target Start/End: Original strand, 2884089 - 2884299
Alignment:
Q  160 tggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggagaaatgttggt 259  Q
    |||| |||||| |||||||||| || ||||| ||  ||||||||   |||||||| ||||| || ||||||||| || ||||||||||||| ||||||||    
T  2884089 tgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgttggt 2884188  T
Q  260 tggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttaggcaatatgtttatatt 359  Q
     || ||| | || |   ||||||||||||||||||| ||||| || || ||||||||| |||| |||||||||| |||||||  |||||||||| | |||    
T  2884189 cgggccagcaaatgcattattcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagcaatatgttcacatt 2884288  T
Q  360 cttcatggaac 370  Q
    ||| |||||||    
T  2884289 cttaatggaac 2884299  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 51046642 - 51046688
Alignment:
Q  282 atggatgaaatatcaactggcttagatagttccacagcttttcaaat 328  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||    
T  51046642 atggatgaaatatcaactggcttagacagttccactacttttcaaat 51046688  T

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Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 150 - 353
Target Start/End: Complemental strand, 44213582 - 44213379
Alignment:
Q  150 ttgcagatactggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggag 249  Q
    ||||||||  ||||||||||||||||||| |||||||||||||| |||||||||   |||||||||||||| |||||||| ||| |  ||||||||||||    
T  44213582 ttgcagattttggggttggatatatgtgcggataccatggtaggggatgaaatgttgcgtggtatctccggaggacaaaggaagcgtgttaccacaggag 44213483  T
Q  250 aaatgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttaggcaata 349  Q
    | ||||||||||||||| | || |   | |||||||||||||| || |||||  | || ||||||||| |||||||||||||||  ||||| ||||||||    
T  44213482 agatgttggttggaccagccaatgcattgttcatggatgaaatttctactggactggacagttccacaacttttcaaattgtgagctctctgaggcaata 44213383  T
Q  350 tgtt 353  Q
    ||||    
T  44213382 tgtt 44213379  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 44225733 - 44225540
Alignment:
Q  160 tggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggagaaatgttggt 259  Q
    |||||||||||||||| || ||||||||||| ||||||||||||   ||||||||||| || ||||| || ||| |  | || |||||||| ||||||||    
T  44225733 tggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactacaggagagatgttggt 44225634  T
Q  260 tggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttaggcaatatgtt 353  Q
    ||||||| | || |   | |||||||||||||| || |||||  | || ||||||||  ||||||| |||||||  ||||| || |||||||||    
T  44225633 tggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctgagacaatatgtt 44225540  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 44236546 - 44236354
Alignment:
Q  160 tggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggagaaatgttggt 259  Q
    |||||||||||||||| || ||||||||||| ||||||||||||   ||||||||||| || ||||| || ||| |  | || |||||||| ||||||||    
T  44236546 tggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactacaggagagatgttggt 44236447  T
Q  260 tggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttaggcaatatgtt 353  Q
    ||||||| | || |   | |||||||||| ||| || |||||  | || ||||||||| ||||||| |||||||  ||||| || |||||||||    
T  44236446 tggaccagccaatgcattgttcatggatg-aatttctactgggctggacagttccacaacttttcagattgtgagctctctgagacaatatgtt 44236354  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 39567704 - 39567615
Alignment:
Q  245 aggagaaatgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaa 334  Q
    |||||||||||||||||||||  | |||| |||||||||||| |||||||| ||||| || ||||| || ||| ||||||||||||||||    
T  39567704 aggagaaatgttggttggacccactaaagctctattcatggacgaaatatctactggtttggatagctcaacaacttttcaaattgtgaa 39567615  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 353
Target Start/End: Original strand, 39360711 - 39360819
Alignment:
Q  245 aggagaaatgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttagg 344  Q
    |||||| ||||||||||||||  | |||| | ||||||||||||||||||| ||||| || ||||| || ||| |||||||||||||||| ||  | |||    
T  39360711 aggagagatgttggttggaccgactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgagg 39360810  T
Q  345 caatatgtt 353  Q
    |||||||||    
T  39360811 caatatgtt 39360819  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 39334909 - 39334991
Alignment:
Q  252 atgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaa 334  Q
    ||||||||||||||| | |||| | ||||||||||||||||||| ||||| || ||||| || ||| ||||||||||||||||    
T  39334909 atgttggttggaccaactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaa 39334991  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 39346167 - 39346249
Alignment:
Q  252 atgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaa 334  Q
    ||||||||||||||| | |||| | ||||||||||||||||||| ||||| || ||||| || ||| ||||||||||||||||    
T  39346167 atgttggttggaccaactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaa 39346249  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 39550904 - 39550822
Alignment:
Q  252 atgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaa 334  Q
    ||||||||||||||  |||||| ||||||||||||||||||||| ||||| || ||||| || ||| ||||||| ||||||||    
T  39550904 atgttggttggaccggcgaaagctctattcatggatgaaatatctactggtttggatagctcgacaacttttcagattgtgaa 39550822  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 39541646 - 39541564
Alignment:
Q  252 atgttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaa 334  Q
    ||||| ||||||||  | |||| ||||||||||||||||||||| ||||| || ||||| || ||| ||||||||||||||||    
T  39541646 atgttagttggaccgactaaagctctattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaa 39541564  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 42135820 - 42135748
Alignment:
Q  256 tggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaat 328  Q
    |||| |||||| | ||||| || |||||||||||||||||||| || ||||||||||| ||  ||||||||||    
T  42135820 tggtaggaccagcaaaagtactgttcatggatgaaatatcaacaggattagatagttcaaccacttttcaaat 42135748  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 39577477 - 39577419
Alignment:
Q  279 ttcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatc 337  Q
    ||||||||||||||||| ||||| || ||||| || ||| |||||||| ||||||||||    
T  39577477 ttcatggatgaaatatctactggtttggatagctcaacaacttttcaagttgtgaaatc 39577419  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 4497929 - 4497989
Alignment:
Q  276 ctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaat 336  Q
    ||||||||||||||||||||||||||  | |||||||| ||| | ||||||||||||||||    
T  4497929 ctattcatggatgaaatatcaactggtcttgatagttcaacaacatttcaaattgtgaaat 4497989  T

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