View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_high_14 (Length: 380)
Name: NF7949_high_14
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 26515201 - 26515546
Alignment:
| Q |
16 |
atgaatttcattttaagacaaagtttatacaaacatattttcaccccttaattatatatagatttaatgcagatgataactgactgaaaaggtattgatt |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515201 |
atgaattttattttaagacaaagtttatacaaacatattttcacctcttaattatatatagatttaatgcagatgataactgactgaaaaggtattgatt |
26515300 |
T |
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| Q |
116 |
gggtgttcggaccctacatcaatattgttcattgagcctaaacataattcaaaatctaatcaattgctaatgatgataaactttagtaacaatgacggtt |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515301 |
gggttttcggaccctacatcaatattgttcattgagcctaaacataattcaaaatctaatcaattgctaatgatgataaactttagtaacaatgacggtt |
26515400 |
T |
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| Q |
216 |
acacaccatacaagaagaacaattgaaagattcaggaacaagttactaaatatttatgatgaatagtgaaggagagagctaatgaaaagtctcttaaaat |
315 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26515401 |
acacaccatacaagaagaacaatagaaagattgaggaacaagttactaaatatttatgatgaatagtgaaggagagagctaatgaaaagtctcttaacat |
26515500 |
T |
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| Q |
316 |
catataatgtattttcaatctcttcaaataaagtaaaatgtacata |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515501 |
catataatgtattttcaatctcttcaaataaagtaaaatgtacata |
26515546 |
T |
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