View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_high_15 (Length: 350)
Name: NF7949_high_15
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 5292661 - 5292323
Alignment:
| Q |
1 |
aaaggagcttaatagacactatcaatatactctttgtatgtgtctattgcacatctttgattatcactttaatcnnnnnnngttctacaaatggaagcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5292661 |
aaaggagcttaatagacactatcaatatactctttgtatgtgtctattgcacatctttgattatcactttaatcagaaaaagttctacaaatggaagcca |
5292562 |
T |
|
| Q |
101 |
cggaaaatgctggattttcattattgtctcaatttgttgtggtgctattagcattgcatttttcagtattggattgtgggatttcatagctaaaactgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5292561 |
cggaaaatgctggattttcattattgtctcaatttgttgtggtactattagcattgcatttttcagtattggattgtgggatttcatagctaaaactgat |
5292462 |
T |
|
| Q |
201 |
agctctgagaaactgagttgcattatcaagggattgatttggatttctttgtctgtttccttgatcgttcaaagagtcaaatggattaggatattaatct |
300 |
Q |
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| T |
5292461 |
aactctgagaaactgagttgcattatcaagggattgatttggatttctttgtctgtttccttgatcgttcaaagagtcaaatggattaggatattaatct |
5292362 |
T |
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| Q |
301 |
ctatatggtggacattttcttgtgtattggtttcatctc |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5292361 |
ctatatggtggacattttcttgtgtattggtttcatctc |
5292323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 15123677 - 15124024
Alignment:
| Q |
1 |
aaaggagcttaatagacactatcaatatactctttgtatgtgtctattgcacatctttgattatcactttaatcnnnnnnngttctacaaatggaagcca |
100 |
Q |
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|||| |||||| ||||||| ||||| ||||||||| | |||||||| | |||||||||| |||||||||||||| ||| |||||||| |||||| |
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| T |
15123677 |
aaagaagcttagtagacacaatcaacatactctttctctgtgtctactacacatctttgcttatcactttaatcagaaaaagttgtacaaatgaaagcca |
15123776 |
T |
|
| Q |
101 |
cggaaaatgctggattttcattattgtctcaatttgttgtggtgctattagcattgcatttttcagtattggattgtgggatttcatagctaaaactgat |
200 |
Q |
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|||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| || ||| || | ||||||||||||||| |
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| T |
15123777 |
aagaaaatgctggaatttccttattgtctcaatctgttgtgcacttattagcattgcatttttcagttttggcttatggaatcttatagctaaaactgat |
15123876 |
T |
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| Q |
201 |
agctctgagaaactga---------gttgcattatcaagggattgatttggatttctttgtctgtttccttgatcgttcaaagagtcaaatggattagga |
291 |
Q |
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| ||||||| |||||| |||||||||||| ||||| |||||||||||||| ||||||| ||||| ||||||||| |||||| | |||| | |
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| T |
15123877 |
aactctgaggaactgaatttggtagtttgcattatcaaaggattcatttggatttcttttgctgtttcattgattgttcaaagaatcaaattggttagaa |
15123976 |
T |
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| Q |
292 |
tattaatctctatatggtggacattttcttgtgtattggtttcatctc |
339 |
Q |
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|||||| ||||||||||||| | ||||||| ||||||||||||||| |
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| T |
15123977 |
tattaaactctatatggtggctttcttcttgtatattggtttcatctc |
15124024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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