View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_high_21 (Length: 236)
Name: NF7949_high_21
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36198277 - 36198056
Alignment:
| Q |
1 |
agcgccatagatgagtccacctcttggaaagaatggaagtggtaacagcgtttttggtagggttgaaagatagaatgtggcacaggatatcatctggtaa |
100 |
Q |
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| T |
36198277 |
agcgccatagatgagtccacctcttggaaagaatggaagtggtaacagcgtttttggtagggttgaaagatagaatgtggcacaggatatcatctggtaa |
36198178 |
T |
|
| Q |
101 |
attgcttattctatcctcgcatggctccattgctgaaagaggttagaggcagctaaagaagcagaacggttttcagttgtattcaaattcgagggagagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36198177 |
attgcttattctatcctcgcatggctccattgctgaaagaggttagaggcagctaaagaagcagaacggttttcagttgtattcaaattcgaggaagagg |
36198078 |
T |
|
| Q |
201 |
gatgctggggacggttggtttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
36198077 |
gatgctggggacggttggtttt |
36198056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 48676371 - 48676474
Alignment:
| Q |
5 |
ccatagatgagtccacctcttggaaagaatggaagtggtaacagcgtttttggtagggttgaaagatagaatgtggcacaggatatcatctggtaaattg |
104 |
Q |
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|||||||||| |||||||||| ||||||| |||| |||| |||| ||||||||| |||||||| |||||||||| ||||||||||||| |||| || |
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| T |
48676371 |
ccatagatgaatccacctctttgaaagaactccagtgataacggcgtctttggtaggattgaaagagagaatgtggcgaaggatatcatctgataaactg |
48676470 |
T |
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| Q |
105 |
ctta |
108 |
Q |
| |
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|||| |
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| T |
48676471 |
ctta |
48676474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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