View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7949_high_25 (Length: 220)
Name: NF7949_high_25
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_high_25 |
 | |
|
| [»] scaffold0360 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0360 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: scaffold0360
Description:
Target: scaffold0360; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 15667 - 15860
Alignment:
| Q |
18 |
ggttttttactcttaatatttccaacaacaagaaaacattaatatatgtaaatgtgtctaaatcttttggatttgggttcgtcccctagaaagtatttct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
15667 |
ggttttttactcttaatatttccaacaacaacaaaacattaatatatgtaaatgtgtctaaatcttttggatttgggttcgttccctagcaagtatttct |
15766 |
T |
|
| Q |
118 |
cgtgaacaaaagtgataagtggtactagtagaggactgactacctacgtatgccttcgagaacataaattagcaacttttttctctcttcttct |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15767 |
cgtgaacaaaagtgataagtggtactggtagaggactgactacctacgtatgccttcgagaacataaactagcaacttttttctctcttcttct |
15860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 5861358 - 5861508
Alignment:
| Q |
63 |
atgtaaatgtgtctaaatcttttggatttgggttcgtcccctagaaagtatttctcgtgaacaaaagtgataagtggtactagtagaggactgactacct |
162 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5861358 |
atgtaaatgtgtctaaatcttttagatttgggttcgtcccctagcaagtatttctcatgaacaaaagtgataagtggtactagtagaggactgcctacct |
5861457 |
T |
|
| Q |
163 |
acgtatgccttcgagaacataaattagcaac--ttttttctctcttcttct |
211 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
5861458 |
acgtatgccttggagaacataaactagcaacttttttttctctcttcttct |
5861508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 5891847 - 5891757
Alignment:
| Q |
120 |
tgaacaaaagtgataagtggtactagtagaggactgactacctacgtatgccttcgagaacataaattagcaacttttttctctcttcttct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||| | |||||||| || |||||||||||| |||||||||| |
|
|
| T |
5891847 |
tgaacaaaagtgataagtggtactagtagaggactggctgcctacgtatgccctagagaacat-aaccagcaactttttttcctcttcttct |
5891757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University