View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_high_26 (Length: 220)
Name: NF7949_high_26
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 48472484 - 48472303
Alignment:
| Q |
16 |
aatatgttgcagttgcagcaaagtgagtgaattgatagttgagacagtaacgttgtgatacnnnnnnnnnnnnnnnncataggagattgatccaaaaata |
115 |
Q |
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| T |
48472484 |
aatatgttgcagttgcagcaaagtgagtgaattgatagttgagacagtaacgttgtgatac----aaaaaaaaaaaacataggagattgatccaaaaata |
48472389 |
T |
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| Q |
116 |
acttcatctaacagtcataacgaaacnnnnnnnnctacagaacaacaaccttcatccgcaattcgagcaagtgaaatattgacatt |
201 |
Q |
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| T |
48472388 |
acttcatctaacagtcataacgaaacaaaaaaaactacagaacaacaaccttcatccgcaattcgagcaagtgaaatattgacatt |
48472303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 35687416 - 35687452
Alignment:
| Q |
167 |
tcatccgcaattcgagcaagtgaaatattgacatttg |
203 |
Q |
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| T |
35687416 |
tcatccgcaatccgagcaagtgaaatattaacatttg |
35687452 |
T |
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