View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_high_4 (Length: 550)
Name: NF7949_high_4
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 52578598 - 52578058
Alignment:
| Q |
1 |
gccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattccacttcannnnnn |
100 |
Q |
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| T |
52578598 |
gccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattctacttcatttttt |
52578499 |
T |
|
| Q |
101 |
nnnn----aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgtgaaataaatcatgccacataaattcaa |
196 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52578498 |
ttttttttaatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gtgaaataaatcatgccacataaattcaa |
52578400 |
T |
|
| Q |
197 |
aggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578399 |
aggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatat |
52578300 |
T |
|
| Q |
297 |
ggatagcattctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttca |
396 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578299 |
ggatagcattctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttca |
52578200 |
T |
|
| Q |
397 |
tatattttactattttattctctgatctattgattggtttttcggtagagtcaattgatgttgtttgatctatatgtctgaccctatcttgtgggacaaa |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52578199 |
tatattttactattttattctctgatctattgattggtttttcggtagagtcaattgatgttgtttgatctatatgtccgaccctatcttgtgggacaaa |
52578100 |
T |
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| Q |
497 |
gacttccttgatgctctcgttcttgttcttatactgatgtcc |
538 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52578099 |
gacttccttgatgctctcgttcttgttcttatactcatgtcc |
52578058 |
T |
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