View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7949_high_9 (Length: 429)

Name: NF7949_high_9
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7949_high_9
NF7949_high_9
[»] chr5 (13 HSPs)
chr5 (1-411)||(37413780-37414190)
chr5 (1-129)||(37401613-37401741)
chr5 (1-129)||(37639163-37639291)
chr5 (1-129)||(37710921-37711049)
chr5 (1-129)||(37823321-37823449)
chr5 (2-131)||(37532515-37532644)
chr5 (2-131)||(37593619-37593748)
chr5 (2-131)||(37696010-37696139)
chr5 (5-120)||(37393496-37393611)
chr5 (1-120)||(37702109-37702228)
chr5 (5-129)||(37382945-37383069)
chr5 (1-96)||(37435160-37435255)
chr5 (35-120)||(37428478-37428562)
[»] chr3 (1 HSPs)
chr3 (1-129)||(14552789-14552917)
[»] chr4 (3 HSPs)
chr4 (1-129)||(16843611-16843739)
chr4 (1-120)||(24218346-24218465)
chr4 (1-108)||(16846279-16846386)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 37413780 - 37414190
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37413780 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacaaagcat 37413879  T
Q  101 acatttcccaagttgagaatattttatgtttgagtaatgtagtattgtattatatattttctagtaccattgtgttatatatttcaattattgtacaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37413880 acatttcccaagttgagaatattttatgtttgagtaatgtagtattgtattatatattttctagtaccattgtgttatatatttcaattattgtacaatt 37413979  T
Q  201 attaaaattatagtaatgatcaatctttcatgttatttccatgattttatattcatatactctctaaaatgtgctcaagacttcagatggttagaatgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37413980 attaaaattatagtaatgatcaatctttcatgttatttccatgattttatattcatatactctctaaaatgtgctcaagacttcagatggttagaatgaa 37414079  T
Q  301 atgaacattctttaaagcaaaacttgccaaatagaaagtgaacatttggatatcaatgaggtctgaattatttaaatattcgatttctcaatggtgtttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37414080 atgaacattctttaaagcaaaacttgccaaatagaaagtgaacatttggatatcaatgaggtctgaattatttaaatattcgatttctcaatggtgtttg 37414179  T
Q  401 aacccatatta 411  Q
    |||||||||||    
T  37414180 aacccatatta 37414190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 37401613 - 37401741
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    |||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37401613 tacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 37401712  T
Q  101 acatttcccaagttgagaatattttatgt 129  Q
    |||||||||||||||||||| ||| ||||    
T  37401713 acatttcccaagttgagaatttttgatgt 37401741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 37639291 - 37639163
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    |||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37639291 tacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 37639192  T
Q  101 acatttcccaagttgagaatattttatgt 129  Q
    |||||||||||||||||||| ||| ||||    
T  37639191 acatttcccaagttgagaatttttgatgt 37639163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 37711049 - 37710921
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    |||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37711049 tacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 37710950  T
Q  101 acatttcccaagttgagaatattttatgt 129  Q
    |||||||||||||||||||| ||| ||||    
T  37710949 acatttcccaagttgagaatttttgatgt 37710921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 37823449 - 37823321
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    |||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37823449 tacatttcctgattggctagaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 37823350  T
Q  101 acatttcccaagttgagaatattttatgt 129  Q
    |||||||||||||||||||| ||| ||||    
T  37823349 acatttcccaagttgagaatttttgatgt 37823321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 37532644 - 37532515
Alignment:
Q  2 acatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcata 101  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  37532644 acatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcatt 37532545  T
Q  102 catttcccaagttgagaatattttatgttt 131  Q
    ||||||| ||||||||||| ||| ||||||    
T  37532544 catttcctaagttgagaatttttgatgttt 37532515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 37593748 - 37593619
Alignment:
Q  2 acatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcata 101  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  37593748 acatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcatt 37593649  T
Q  102 catttcccaagttgagaatattttatgttt 131  Q
    ||||||| ||||||||||| ||| ||||||    
T  37593648 catttcctaagttgagaatttttgatgttt 37593619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 37696139 - 37696010
Alignment:
Q  2 acatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcata 101  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  37696139 acatttccaaattggctagaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcatt 37696040  T
Q  102 catttcccaagttgagaatattttatgttt 131  Q
    ||||||| ||||||||||| ||| ||||||    
T  37696039 catttcctaagttgagaatttttgatgttt 37696010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 37393496 - 37393611
Alignment:
Q  5 tttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| |||||||||||||||||| |||    
T  37393496 tttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaatcatcttcatgggtcaatcacatgttctagcaccaagcatccat 37393595  T
Q  105 ttcccaagttgagaat 120  Q
    |||| |||||||||||    
T  37393596 ttcctaagttgagaat 37393611  T

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Target: chr5; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 37702228 - 37702109
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  37702228 tacatttcccaattggctagaaactttaccagagttacaggtgctgagtttacgatcaaatcatcttcatggtgcaatcacttgttctagcaccaagcat 37702129  T
Q  101 acatttcccaagttgagaat 120  Q
     ||||||| |||||||||||    
T  37702128 tcatttcctaagttgagaat 37702109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 37382945 - 37383069
Alignment:
Q  5 tttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacat 104  Q
    |||||||||||||| |||||||||||||| ||||||||||| |||||| |||||||||| |||||||| |||||||| || ||||||||||| ||| |||    
T  37382945 tttcccaattggcttgaaactctacaagaattacaggtgctcagtttaagatcaaataaacttcatggcgcaatcacatgctctagcaccaaacatccat 37383044  T
Q  105 ttcccaagttgagaatattttatgt 129  Q
    |||||||||||||||| ||| ||||    
T  37383045 ttcccaagttgagaatttttgatgt 37383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 37435255 - 37435160
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaa 96  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| ||| ||||| ||||||||||||||| ||||||    
T  37435255 tacatttcccaattggctagaaactctacaagagttacaggtactcagtttaagatcaaataaacttaatggttcaatcacctgttctaacaccaa 37435160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 37428562 - 37428478
Alignment:
Q  35 ttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaat 120  Q
    |||||||| || | |||| |||||||||| || |||||| ||||||| |||||||  ||||| ||| |||| ||||||||||||||    
T  37428562 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaaacatccatt-cccaagttgagaat 37428478  T

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Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 14552917 - 14552789
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||    
T  14552917 tacatttcccaattggctagaaactctacaagagttacaagtgctaagtttacgatcaaatcatcttcacggagcaatcacctgttctagcatcaagcat 14552818  T
Q  101 acatttcccaagttgagaatattttatgt 129  Q
     ||||||| ||||||||||| ||| ||||    
T  14552817 tcatttcctaagttgagaatttttgatgt 14552789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 16843611 - 16843739
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    ||||||||||| |||||| ||||||||||||||||||||||| ||   ||||||||| |||||||||||||| | |||||| ||||||||||||||||||    
T  16843611 tacatttcccagttggcttgaaactctacaagagttacaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcat 16843710  T
Q  101 acatttcccaagttgagaatattttatgt 129  Q
     ||||||| ||||||||||| ||| ||||    
T  16843711 ccatttcctaagttgagaatttttgatgt 16843739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 24218346 - 24218465
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    |||||||||||||||| |||||  ||| |||||||||||||| || ||||||||||||||| |||||||||||| |||||| |||||||||||||| ||     
T  24218346 tacatttcccaattggttagaagttctgcaagagttacaggtactcagtttacgatcaaatcatcttcatggtggaatcacttgttctagcaccaaacaa 24218445  T
Q  101 acatttcccaagttgagaat 120  Q
     ||||||| ||| |||||||    
T  24218446 tcatttccgaagatgagaat 24218465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16846279 - 16846386
Alignment:
Q  1 tacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcat 100  Q
    ||||||||||| |||||| |||||||||||||||||||| || || |||||| | |||||||| ||| ||||| ||||||| ||||||||||||||||||    
T  16846279 tacatttcccagttggcttgaaactctacaagagttacatgtactcagtttaaggtcaaataaactttatggttcaatcacatgttctagcaccaagcat 16846378  T
Q  101 acatttcc 108  Q
     |||||||    
T  16846379 ccatttcc 16846386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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