View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7949_low_12 (Length: 400)

Name: NF7949_low_12
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7949_low_12
NF7949_low_12
[»] chr4 (5 HSPs)
chr4 (9-154)||(2873817-2873961)
chr4 (173-278)||(2873719-2873824)
chr4 (334-388)||(2873609-2873663)
chr4 (184-259)||(2901380-2901455)
chr4 (184-248)||(2883510-2883574)
[»] chr2 (3 HSPs)
chr2 (189-264)||(44214023-44214098)
chr2 (189-248)||(44237002-44237061)
chr2 (189-217)||(44226188-44226216)
[»] chr7 (2 HSPs)
chr7 (189-247)||(39334417-39334475)
chr7 (189-247)||(39568129-39568187)
[»] chr1 (1 HSPs)
chr1 (183-247)||(2164586-2164650)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 2873961 - 2873817
Alignment:
Q  9 aatagtattatttaccttcagcatatagtctgttatcagactttcctcttggccttcagttgaagttgcctagtatatcaaaattcattgagatgaatat 108  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873961 aatagtattatt-accttcagcatataatcggttatcagactttcctcttggccttcagttgaagttgcctagtatatcaaaattcattgagatgaatat 2873863  T
Q  109 atattattacatcaaatgctatagaaatatatagcataacgtagtt 154  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  2873862 atattattacatcaaatgctatagaaatatatagcataatgtagtt 2873817  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 2873824 - 2873719
Alignment:
Q  173 atgtagtttctttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagcaaatctatg 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873824 atgtagtttctttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagcaaatctatg 2873725  T
Q  273 catcac 278  Q
    ||||||    
T  2873724 catcac 2873719  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 2873663 - 2873609
Alignment:
Q  334 gggtgttccattgcatgtatggacatcaattttcacccataatcataatcatatt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873663 gggtgttccattgcatgtatggacatcaattttcacccataatcataatcatatt 2873609  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 2901380 - 2901455
Alignment:
Q  184 ttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcaga 259  Q
    |||| ||||||||  ||||||||||||||||||||||  | ||||||||||| |||||||||||| | ||||||||    
T  2901380 ttcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttctagacaactcaga 2901455  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 2883574 - 2883510
Alignment:
Q  184 ttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttcta 248  Q
    |||||||||||||| ||||||||| ||||||||||||  | || |||||||| ||||||||||||    
T  2883574 ttctcaccttcatgaagacatcaacatctgggtctggcttaatatttgcttccttttctcttcta 2883510  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 44214023 - 44214098
Alignment:
Q  189 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagca 264  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||| | || ||||||||| | | |||||||||||    
T  44214023 accttcatgtagacatcaatatctgggtcaggcttgatatttgctaccttctctcttctagaaagctcagatagca 44214098  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 44237002 - 44237061
Alignment:
Q  189 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttcta 248  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||| | || |||||||||    
T  44237002 accttcatgtagacatcaatatctgggtcaggcttgatatttgctgccttctctcttcta 44237061  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 44226188 - 44226216
Alignment:
Q  189 accttcatgtagacatcaatatctgggtc 217  Q
    |||||||||||||||||||||||||||||    
T  44226188 accttcatgtagacatcaatatctgggtc 44226216  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 39334475 - 39334417
Alignment:
Q  189 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 247  Q
    ||||||||||| |||||||||||||| || ||  |||| ||||| ||||||||||||||    
T  39334475 accttcatgtacacatcaatatctggatcaggcttgatatttgcatctttttctcttct 39334417  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 39568129 - 39568187
Alignment:
Q  189 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 247  Q
    ||||||||||| |||||||||||||| || ||  |||| ||||| ||||||||||||||    
T  39568129 accttcatgtacacatcaatatctggatcaggcttgatatttgcatctttttctcttct 39568187  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 2164586 - 2164650
Alignment:
Q  183 tttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 247  Q
    |||||||||||||| ||| |||||| ||| || |||||| | ||||||||||| || ||||||||    
T  2164586 tttctcaccttcatataggcatcaacatcaggatctggtttaatctttgcttccttctctcttct 2164650  T

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