View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_low_13 (Length: 392)
Name: NF7949_low_13
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 376
Target Start/End: Complemental strand, 6063209 - 6062853
Alignment:
| Q |
28 |
tcaaaatttacaactctaaaattttctatgataacataaccgaaacataatataacttttctatgataacattttgtcgaacacatcataagtg-nnnnn |
126 |
Q |
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| T |
6063209 |
tcaaaatttacaactctaaaattttctatgataacataaccgaaacataatataacttttctatgataacattttgtcgaacacatcataagtgaaaaaa |
6063110 |
T |
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| Q |
127 |
nnnttattgtatatttcaattctcggataaacttttgaatgaaaatatggtagttacttgtgattacattcaattaattcgaaattgtagaag-nnnnnn |
225 |
Q |
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| T |
6063109 |
aaattattgcatatttcaattctcggataaacttttgaatgaaaatatggtagttacttgtgattacattcaattaattcgaaattgtagaagaaaaaaa |
6063010 |
T |
|
| Q |
226 |
ntgtcacaacaatcgaaagcaagaatttttcttaaagtgtttgagacaaaaactttttatagaatgacactttgcttcatcat------gtgaaaaactc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
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| T |
6063009 |
atgtcacaacaatcgaaagcaagaatttttcttaaagtgtttgagacaaaaactttttatagaatgatactttgcttcatcatacccaaattaaaaactc |
6062910 |
T |
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| Q |
320 |
tagaaaatagaacctaatttattcatgtgaatttagctcagttggtagggacaatgt |
376 |
Q |
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| T |
6062909 |
tagaaaatagaacctaatttattcatgtgaatttagcccagttggtggggacaatgt |
6062853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 370
Target Start/End: Complemental strand, 28070997 - 28070966
Alignment:
| Q |
339 |
tattcatgtgaatttagctcagttggtaggga |
370 |
Q |
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| T |
28070997 |
tattcatgtgaatttagctcagttggtaggga |
28070966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 4600342 - 4600309
Alignment:
| Q |
343 |
catgtgaatttagctcagttggtagggacaatgt |
376 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
4600342 |
catgtgagtttagctcagttggtagggacaatgt |
4600309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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