View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7949_low_15 (Length: 386)

Name: NF7949_low_15
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7949_low_15
NF7949_low_15
[»] chr7 (5 HSPs)
chr7 (174-273)||(40212528-40212627)
chr7 (290-339)||(40212981-40213030)
chr7 (32-91)||(30769556-30769615)
chr7 (62-94)||(40212416-40212448)
chr7 (30-82)||(43445390-43445442)
[»] chr3 (3 HSPs)
chr3 (23-80)||(51487872-51487929)
chr3 (30-91)||(31742583-31742644)
chr3 (30-82)||(52678487-52678540)
[»] chr2 (2 HSPs)
chr2 (30-91)||(29192544-29192605)
chr2 (24-72)||(33616465-33616514)
[»] chr1 (3 HSPs)
chr1 (30-91)||(15182478-15182539)
chr1 (28-91)||(8905843-8905906)
chr1 (29-82)||(44671930-44671983)
[»] scaffold0087 (1 HSPs)
scaffold0087 (30-82)||(26957-27009)
[»] chr6 (2 HSPs)
chr6 (28-91)||(28883639-28883702)
chr6 (30-91)||(3049425-3049486)
[»] chr5 (1 HSPs)
chr5 (30-91)||(29806897-29806958)
[»] chr4 (1 HSPs)
chr4 (30-83)||(12241180-12241233)
[»] scaffold0001 (1 HSPs)
scaffold0001 (30-82)||(404872-404924)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 40212528 - 40212627
Alignment:
Q  174 tgttagaaagtagttgtacaaatattatttattgtactacaaatgatctcatggccttaatgttagtttggtaaaggtaagttaacatgtaaagatatag 273  Q
    ||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40212528 tgttagaaagtggttgtacaaatattatttctcgtactacaaatggtctcatggccttaatgttagtttggtaaaggtaagttaacatgtaaagatatag 40212627  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 40212981 - 40213030
Alignment:
Q  290 tgtaaagatataaaggacaaaatatgaatctgtaatttgtaacatttgtt 339  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40212981 tgtaaagatataaaggacaaaatatgaatctgtaatttataacatttgtt 40213030  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 30769556 - 30769615
Alignment:
Q  32 atatttgtacatctctttcttacaacttttttgataactttatttttctctccaatgatt 91  Q
    ||||||||| |||||||||||||||||||  ||| |||||| ||||||||||| ||||||    
T  30769556 atatttgtaaatctctttcttacaactttcatgacaactttgtttttctctcctatgatt 30769615  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 40212416 - 40212448
Alignment:
Q  62 ttgataactttatttttctctccaatgatttgc 94  Q
    |||||||||||||||||||||||||||||||||    
T  40212416 ttgataactttatttttctctccaatgatttgc 40212448  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 43445390 - 43445442
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctct 82  Q
    |||||||||||||||| ||| ||||||||||| | |||||||| |||||||||    
T  43445390 tgatatttgtacatctatttgttacaacttttataataactttgtttttctct 43445442  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 51487929 - 51487872
Alignment:
Q  23 agagaaatgatatttgtacatctctttcttacaacttttttgataactttatttttct 80  Q
    |||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  51487929 agagaagtgatatttgtacatctctttcttacaactttcatgacaactttatttttct 51487872  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 31742644 - 31742583
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctctccaatgatt 91  Q
    |||||||||||||| ||||||||||||||||| | |||| ||| ||||||||| | ||||||    
T  31742644 tgatatttgtacatatctttcttacaacttttataataattttgtttttctcttctatgatt 31742583  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 52678487 - 52678540
Alignment:
Q  30 tgatatttgtacatctctttct-tacaacttttttgataactttatttttctct 82  Q
    ||||||||||||||||||||||  ||||||||  |||||||||| |||||||||    
T  52678487 tgatatttgtacatctctttctaaacaactttcatgataactttgtttttctct 52678540  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 29192544 - 29192605
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctctccaatgatt 91  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||| | ||||||    
T  29192544 tgatatttgtacatctctttcttacaacttttatgacaactttgtttttctcttctatgatt 29192605  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 33616465 - 33616514
Alignment:
Q  24 gagaaatgatatttgtacatctctttctt-acaacttttttgataacttt 72  Q
    |||||||||||||||||||||| |||||| |||| |||| ||||||||||    
T  33616465 gagaaatgatatttgtacatctatttcttaacaaattttgtgataacttt 33616514  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 15182478 - 15182539
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctctccaatgatt 91  Q
    ||||||||||||||||||||||| |||||||  ||| |||||||||||||||||| ||||||    
T  15182478 tgatatttgtacatctctttctttcaactttcatgacaactttatttttctctcctatgatt 15182539  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 8905906 - 8905843
Alignment:
Q  28 aatgatatttgtacatctctttcttacaacttttttgataactttatttttctctccaatgatt 91  Q
    |||||||||||||||||||||||||||||||||  | |||||||| ||||||||| | ||||||    
T  8905906 aatgatatttgtacatctctttcttacaactttcataataactttgtttttctcttctatgatt 8905843  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 44671930 - 44671983
Alignment:
Q  29 atgatatttgtacatctctttcttacaacttttttgataactttatttttctct 82  Q
    |||||||||||||| |||||   |||||||||| ||||||||||| ||||||||    
T  44671930 atgatatttgtacaactcttcggtacaacttttatgataactttagttttctct 44671983  T

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Target: scaffold0087 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 26957 - 27009
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctct 82  Q
    |||||||||||||||||||||||| ||||||| |||||||||| |||||||||    
T  26957 tgatatttgtacatctctttcttataacttttatgataactttgtttttctct 27009  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 28883639 - 28883702
Alignment:
Q  28 aatgatatttgtacatctctttcttacaacttttttgataactttatttttctctccaatgatt 91  Q
    |||||||||||||||||||||||||||||||||  ||| |||||| ||||||||| | ||||||    
T  28883639 aatgatatttgtacatctctttcttacaactttcatgacaactttgtttttctcttctatgatt 28883702  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 3049425 - 3049486
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctctccaatgatt 91  Q
    |||| ||||||||||||||||||| ||||||  ||| || ||||||||||||||| ||||||    
T  3049425 tgatgtttgtacatctctttcttataactttcatgacaattttatttttctctcctatgatt 3049486  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 29806897 - 29806958
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctctccaatgatt 91  Q
    |||||||||||||||||||||||| ||||||| ||| || ||||||||||| ||| ||||||    
T  29806897 tgatatttgtacatctctttcttataacttttatgacaattttatttttctttcctatgatt 29806958  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 12241233 - 12241180
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctctc 83  Q
    ||||||||||||| ||||||  |||||| ||| ||| |||||||||||||||||    
T  12241233 tgatatttgtacaactcttttgtacaacctttatgacaactttatttttctctc 12241180  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 404924 - 404872
Alignment:
Q  30 tgatatttgtacatctctttcttacaacttttttgataactttatttttctct 82  Q
    ||||||||||||| ||||||  |||||||||| ||| |||||| |||||||||    
T  404924 tgatatttgtacaactctttggtacaacttttatgacaactttgtttttctct 404872  T

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