View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_low_19 (Length: 335)
Name: NF7949_low_19
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 44727535 - 44727840
Alignment:
| Q |
17 |
acaaatttgtttccatcagctcgaattccgatggcaagaagtgtgacttgagaagtaagcaagtccaagtcaccagaggggtcattaacagctcctgcca |
116 |
Q |
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| T |
44727535 |
acaaatttgtttccatcagctcgaattccgatggcaagaagtgtgacttgagaagtaagcaagtccaagtcaccagaggggtcattaacagctcctgcca |
44727634 |
T |
|
| Q |
117 |
ctgttgcaccacgaagtacatcatccaaagggttcacacctaacttataaggtttctttcctttgcatattttagtaacaagactctctacccttggtat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44727635 |
ctgttgcaccacgaagtacatcatccaaagggttcacacctaacttataaggtttctttcctttgcatattttagtaacaagactctctacccttggtat |
44727734 |
T |
|
| Q |
217 |
attacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattagcctttcacaattttcaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44727735 |
attacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattagcttttcacaattttcaaac |
44727834 |
T |
|
| Q |
317 |
acctct |
322 |
Q |
| |
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|||||| |
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|
| T |
44727835 |
acctct |
44727840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 322
Target Start/End: Complemental strand, 47843305 - 47843089
Alignment:
| Q |
103 |
aacagctcctgccactgttgcaccacgaagtacatcatccaaagggttcacacctaacttataaggtttctttcctttgcatattttagtaacaagactc |
202 |
Q |
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| T |
47843305 |
aacagctcctgccacagctgcaccacaaagtgcagcttccaaagggttcattcct---ttataaagttcctttcctttgcatattttagtaacaagatcc |
47843209 |
T |
|
| Q |
203 |
tctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattagccttt |
302 |
Q |
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| ||| | |||||||| ||||||||||| |||||||||||||| ||||||| ||||||| ||| | ||||||||| | || ||||||||| ||||||| |
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| T |
47843208 |
ttcaccttcggtatattccaacatccaccaacaattatcacatcatttatatcatcaacttttatatctgcatcttgcaagctttggatgatcagccttt |
47843109 |
T |
|
| Q |
303 |
cacaattttcaaacacctct |
322 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
47843108 |
cacacttttcaaacacctct |
47843089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 42926620 - 42926810
Alignment:
| Q |
106 |
agctcctgccactgttgcaccacgaagtacatcatccaaagggttcacacctaactt-ataaggtttctttcctttgcatattttagtaacaagactctc |
204 |
Q |
| |
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||||||||||| || ||||||||||||| || ||| |||||| ||||| | || ||| |||| | || ||||||||||||||| ||||||||||| |||| |
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| T |
42926620 |
agctcctgccattgctgcaccacgaagtgcagcattcaaaggattcac-catacctttataaagcttatttcctttgcatattgtagtaacaagattctc |
42926718 |
T |
|
| Q |
205 |
tacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattag |
297 |
Q |
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||| |||||||| ||||||||| |||||||||||||||||| |||||| ||||||| |||| ||||||||||| | ||||||||||||||| |
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| T |
42926719 |
cacctttggtataatacaacatc-acctacaattatcacatcatttatactctcaacgtctacttttgcatcttgcaagcattggatgattag |
42926810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 172 - 322
Target Start/End: Original strand, 47845187 - 47845338
Alignment:
| Q |
172 |
ctttcctttgcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatcttt |
271 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | |||| |
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| T |
47845187 |
ctttactttgcatattttagtaacaagattcttcacc-ttggtatattacaacatccacctacaattatcacatcatttatattcttagtttccaccttt |
47845285 |
T |
|
| Q |
272 |
gcatcttgtatgcattggatgattag--cctttcacaattttcaaacacctct |
322 |
Q |
| |
|
||||| || | ||||||||||||||| ||||||||| || |||||||||||| |
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| T |
47845286 |
gcatcatgcaagcattggatgattagcccctttcacacttctcaaacacctct |
47845338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 322
Target Start/End: Original strand, 47879339 - 47879488
Alignment:
| Q |
173 |
tttcctttgcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttg |
272 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |||| ||||||| | | ||||| |
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| T |
47879339 |
tttcctttgcatattttagtaacaagattcttcacccttggtatattccaacatccaccaacaattataacatcatttaaattctcagtgtttcactttg |
47879438 |
T |
|
| Q |
273 |
catcttgtatgcattggatgattagcctttcacaattttcaaacacctct |
322 |
Q |
| |
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|||||| | ||| |||||||||||||||||||| ||||||| |||||| |
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| T |
47879439 |
catctttcaagcactggatgattagcctttcacatatttcaaatacctct |
47879488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 21130922 - 21130988
Alignment:
| Q |
215 |
atattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgta |
281 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
21130922 |
atattacaacatccacttaccattatcacatcatttatattctcaacttctacctttgcatcttgta |
21130988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 21251104 - 21251038
Alignment:
| Q |
215 |
atattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgta |
281 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
21251104 |
atattacaacatccacttaccattatcacatcatttatattctcaacttctacctttgcatcttgta |
21251038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 808326 - 808226
Alignment:
| Q |
222 |
aacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgtatgcattggatgattagcctttcacaattttcaaacacctc |
321 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||| | | ||||||| ||||||||| |||| ||||||||||| || |||||||| ||||| |||||||| |
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| T |
808326 |
aacatccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcgaacacctc |
808227 |
T |
|
| Q |
322 |
t |
322 |
Q |
| |
|
| |
|
|
| T |
808226 |
t |
808226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 320
Target Start/End: Complemental strand, 39242015 - 39241876
Alignment:
| Q |
181 |
gcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatcttgt |
280 |
Q |
| |
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|||||| || ||||||||| || |||||||| |||| | |||||||| | |||||||||||||| |||| || |||||||| || ||||||||| ||| |
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| T |
39242015 |
gcatatcttggtaacaagattcctcacccttgggatataagaacatccatcaacaattatcacatcatttacatcctcaacttttacctttgcatcatgt |
39241916 |
T |
|
| Q |
281 |
atgcattggatgattagcctttcacaattttcaaacacct |
320 |
Q |
| |
|
| || |||||||| || |||||||| ||| ||||||||| |
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|
| T |
39241915 |
aaacactggatgataaggctttcacattttccaaacacct |
39241876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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