View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7949_low_20 (Length: 333)
Name: NF7949_low_20
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 30343120 - 30343430
Alignment:
| Q |
1 |
aaagaaggaagagagaggttaatgatgttttgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343120 |
aaagaaggaagagagaggttaatgatgttttgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggt |
30343219 |
T |
|
| Q |
101 |
tgagagtagcattagaggaacaaggtggggttggtgtttcatcggaaacgtaaccgaagttgagttcaacaatgtgtggttggttttgatcatagtcgca |
200 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343220 |
tgagagtggcgttagaggaacaaggtggggttggtgtttcatcggaaacgtaaccgaagttgagttcaacaatgtgtggttggttttgatcatagtcgca |
30343319 |
T |
|
| Q |
201 |
aacaacgccgtgtggggcggagagacagagatcatcggggaaaagtgtttgccatggaatggttgggttgagggagttgagaacattgtagagtgctttt |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343320 |
aacaacgccgtgtggagcggagagacagagatcatcggggaaaagtgtttgccatggaatggttgggttgagggagttgagaacattgtagagtgctttt |
30343419 |
T |
|
| Q |
301 |
tgttctgttgg |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
30343420 |
tgttctgttgg |
30343430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 30325540 - 30325493
Alignment:
| Q |
264 |
tgggttgagggagttgagaacattgtagagtgctttttgttctgttgg |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30325540 |
tgggttgatggagttgagaacattgtagagtgctttttgttcggttgg |
30325493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 30337177 - 30337130
Alignment:
| Q |
264 |
tgggttgagggagttgagaacattgtagagtgctttttgttctgttgg |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30337177 |
tgggttgatggagttgagaacattgtagagtgctttttgttcagttgg |
30337130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 30333045 - 30332972
Alignment:
| Q |
31 |
tgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggttgag |
104 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||| ||||| |||||||||| |
|
|
| T |
30333045 |
tgtgtgttgttgaagcatttgtggaatgtgagtttgcggaggtagttgaaaggggttaagagtattgggttgag |
30332972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University