View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_low_26 (Length: 230)
Name: NF7949_low_26
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 29515077 - 29514848
Alignment:
| Q |
1 |
gcaacaagtaattcaaaattaacctcaattgaaatgttgtaatcttgaaaagtgaagtcaattcaacaaggtgttgctatgactaattgcttcatttgtg |
100 |
Q |
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| T |
29515077 |
gcaacaagtaattcaaaattaacctcaattgaaatgttgcaatcttgaaaagtgaagtcaattcaacaaggtgttgctatgactaattgcttcatttgtg |
29514978 |
T |
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| Q |
101 |
tttaaaatgtcaagtggtgtacaaatcacaaactatatgattcaactaacttgtatgaacaataaaaaggtcttcaatacaagtttcagaattacaagtt |
200 |
Q |
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| T |
29514977 |
tttaaaatgtcaagtggtgtacaaatcacaaactatatcattcaactaacttgtatgaacaataaaaaggtcttcaatacaagtttcagaattacaagtt |
29514878 |
T |
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| Q |
201 |
ctcaaaaggcagaggctacaccatatgaag |
230 |
Q |
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| T |
29514877 |
ctcaaaaggcagaggctacaccatatgaag |
29514848 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 44924174 - 44924291
Alignment:
| Q |
94 |
atttgtgtttaaaatgtcaagtggtgtacaaatcacaaactatatgattcaactaacttgtatgaacaataaaaaggtcttcaatacaagtttcagaatt |
193 |
Q |
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||||||| ||||||||||| | || |||||||||||| ||||||| || ||||||||| |||| || | || || || | ||| ||||||||| | || |
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| T |
44924174 |
atttgtgattaaaatgtcaggaggagtacaaatcacagactatatcatccaactaactagtataaagatcaagcagatcattaatgcaagtttcacagtt |
44924273 |
T |
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| Q |
194 |
acaagttctcaaaaggca |
211 |
Q |
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| T |
44924274 |
ataagttctcaaaaggca |
44924291 |
T |
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