View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_low_27 (Length: 226)
Name: NF7949_low_27
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 54442810 - 54443002
Alignment:
| Q |
15 |
ttggtggtggcagtggatgttcgataatcattttcgacaaagtttggaggtaggagcggtacaaagataaggaggagggatgtttaaaaccggccccaac |
114 |
Q |
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| T |
54442810 |
ttgggggtggcagtggatgttcgataatcattttcgacaaagtttggaggtaggagcggtacaaagataaggaggagggatgtttaaaaccggccccaac |
54442909 |
T |
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| Q |
115 |
tcgccccgttgccatccctctacaatattatcttccacaatataactatccactttattttcataatttgatcttacatataaccatacaatc |
207 |
Q |
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| T |
54442910 |
tcgccccgttgccatccctctacaatattatcttccacaatataactaaccactttattttcataatttgatcttacaaataaccatacaatc |
54443002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 54436970 - 54437019
Alignment:
| Q |
138 |
aatattatcttccacaatataactatccactttattttcataatttgatc |
187 |
Q |
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| T |
54436970 |
aatagtatcttccacaatacaactaaccactttattttcataatttgatc |
54437019 |
T |
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