View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_low_3 (Length: 580)
Name: NF7949_low_3
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 41785410 - 41785954
Alignment:
| Q |
18 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785410 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgag |
41785509 |
T |
|
| Q |
118 |
aacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaagtttctatttatgaagaggaactaagaaggctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785510 |
aacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaagtttctatttatgaagaggaactaagaaggctta |
41785609 |
T |
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| Q |
218 |
aagagggtgctgctaatgttactgcaactgcaagtgaggaaacacactcaccagtggttgatctaaagggttttgaatttgatgctgctctaaatggatt |
317 |
Q |
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| T |
41785610 |
aagagggtgctgctaatgttactgcaaatgcaagtgaggaaacacactcaccagtggttgatctaaagggttttgaatttgatgctgctctaaatggatt |
41785709 |
T |
|
| Q |
318 |
agatgtagtggctgcaaaagtcgaggaacacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaag |
417 |
Q |
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| T |
41785710 |
agatgtagtggctgcgaaagtcgaggaacacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggattggataaag |
41785809 |
T |
|
| Q |
418 |
aaaatgaacgtcgaaatgaaacaattgaaggaaaatgtggattgtcttacaacgctactgagcgaaaaagaagagcaggaattgttgttaagagacaaag |
517 |
Q |
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| T |
41785810 |
aaaatgaacgtcgaaatgaaacaattgaaggaaaatgtggattgtcttacaacgctactgagcgaaaaagaagagcaggaattgttgttaagagacaaag |
41785909 |
T |
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| Q |
518 |
tatggaatttagaagccacagtgagcaaagaaggaggagagaaat |
562 |
Q |
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| T |
41785910 |
tatggaatttagaagccacagtgagcaaagaaggaggagagaaat |
41785954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 10834629 - 10834795
Alignment:
| Q |
18 |
gaaaatggaagaattggcagaaaagttgaggaagaaaatggaagacaatatccg-cttgttgcaccagaggatccacgtagcagaacaattgaacaatga |
116 |
Q |
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| T |
10834629 |
gaaaatggaagaattggcaggagattttagatagagaatggaaaacaatatagggcttgttgcactagaggatccatttggcagaacagctgaacaatga |
10834728 |
T |
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| Q |
117 |
gaacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaa |
183 |
Q |
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| T |
10834729 |
aaacaaaaacagttgcaaattaacaaagttaaggtatgagcaagagaacaagattctgggagagaaa |
10834795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 425
Target Start/End: Original strand, 10835068 - 10835178
Alignment:
| Q |
309 |
aaatggattagatgtagtggctgcaaaagtcgaggaacacagagagtgtgtcatgagcaatgtgtctaaaatgctttgtgaggttcagtttgcgaaggat |
408 |
Q |
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||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||| ||| |||||||| || ||||||| |||||| |||||| |
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| T |
10835068 |
aaatggattagatgtagcaactgcaaaagttgaggaacacagtg--tgtgtcatgagcagtgtttctaaaattct----gaggttcggtttgctaaggat |
10835161 |
T |
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| Q |
409 |
tggataaagaaaatgaa |
425 |
Q |
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| T |
10835162 |
aggataaagaaaatgaa |
10835178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 2281576 - 2281450
Alignment:
| Q |
50 |
agaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgagaacaaaagcagttgcaaattaacaaagataag |
149 |
Q |
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||||||||||||| ||||| | | ||||| | |||||||||||||||||||||| |||| || || |||||| ||||| |||||| |||||| || |
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| T |
2281576 |
agaaaatggaagataatatacatatattgcatcggaggatccacgtagcagaacaactgaataacgaaaacaaacacagttacaaattgacaaagcaaaa |
2281477 |
T |
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| Q |
150 |
gtacgaggaagagaacaagattcttgg |
176 |
Q |
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||| |||||||||||||| || ||||| |
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| T |
2281476 |
gtatgaggaagagaacaaaatgcttgg |
2281450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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