View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_low_31 (Length: 210)
Name: NF7949_low_31
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 45601479 - 45601653
Alignment:
| Q |
1 |
tcagacaaataataatcatgcccgtcttcaccccctatcacaataattctgttcttccacgtcgagcatgagtggctatcacgaggagatggtggcgtgc |
100 |
Q |
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| T |
45601479 |
tcagacaaataataatcatgcccgtcttcaccccctatcacaataattctgttcttccacgtcgagcatgagtggctatcacgaggagatggtggcgtgc |
45601578 |
T |
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| Q |
101 |
ctgatgttgtaggacgcatccaaacaagtgtctctgtaagtgaaacggcgaaaatgaattatcagaataatctac |
175 |
Q |
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| T |
45601579 |
ctgatgttgtaggacgcatccaaacaagtgtctctataagtgaaacggcgaaaatgaattatcagaataatctac |
45601653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 45639355 - 45639184
Alignment:
| Q |
1 |
tcagacaaataataatcatgcccgtcttcaccccctatcacaataattctgttcttccacgtcgagcatgagtggctatcacgaggagatggtggcgtgc |
100 |
Q |
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| T |
45639355 |
tcagacaaataagaatcacgctcgtctataccccctatcacaataattttgttcttccacgatgagcaagtgtggctcgcacgaggagatggcggcgtgc |
45639256 |
T |
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| Q |
101 |
ctgatgttgtaggacgcatccaaacaagtgtctctgtaagtgaaacggcgaaaatgaattatcagaataatc |
172 |
Q |
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| T |
45639255 |
ctaatgttgtaggatgcgtccaaacaagtgtctctacaagtgaaatagtgaaaatgaattatcataataatc |
45639184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 34228949 - 34228917
Alignment:
| Q |
178 |
aggcataacaagggctgtgactaatgtcagctt |
210 |
Q |
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| T |
34228949 |
aggcataactagggctgtgactaatgtcagctt |
34228917 |
T |
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