View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_low_5 (Length: 514)
Name: NF7949_low_5
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 34388016 - 34388511
Alignment:
| Q |
1 |
ttgacagacggcatcacctgaggtggtttattgcggaggaactttctgactctgtgttcagcatacgcctcgccctcagcatggttctcaagcacacctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34388016 |
ttgacagacggcatcacctgaggtggtttattgcggaggaactttctgactctgtgttcagcatacgcctcgccctcagcatggttctcaagcacacctg |
34388115 |
T |
|
| Q |
101 |
caattctgttctgtttgtttaccctgaaaaccaattgaattcaatataatacattcatcagaataaaactaggctcaagttcaatcttcattttctgcta |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34388116 |
caattctgttctgtttgtttaccctaaaaaccaattgaattcaatatattacattcatcagaataaaactaggctcaagttcaatcttcattttctgcta |
34388215 |
T |
|
| Q |
201 |
cattttttctttaacttgcattgatatgctttgcattcatgttgattccaaagaattttttcaaccatatgaagaataaattcatgttgtcctgtcgatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34388216 |
tattttttctttaacttgcattgatatgctttgcattcatgttgattccaaagagttttttcaaccatatgaagaataaattcatgttgtcctgtcgatc |
34388315 |
T |
|
| Q |
301 |
tccaataggattgactctgtctgaaaacacatatctctcgatttttctgcttaattttaatattttctactaatgttaatgaaatcaaaataaaataaaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34388316 |
tccaataggattgactctgtctgaaaacacatatctctcgatttttctgcttaattttaatattttctactaatgttaatgaaatcaaaataaaataaaa |
34388415 |
T |
|
| Q |
401 |
acttagcaaagagaagctcagattttagttcacttgtttctcataacctagaaattagaggtctgcaaaaaccaataacaaatctacagatacatt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
34388416 |
acttagcaaagagaagctcagattttagttcacttgtttctcataacctagaaattagaggtttccaaaaaccaataacaaatctacagacacatt |
34388511 |
T |
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