View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7949_low_7 (Length: 503)
Name: NF7949_low_7
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_7 |
 | |
|
| [»] scaffold0176 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 23)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 38192236 - 38191757
Alignment:
| Q |
1 |
ttatcaagcaactctattttcgtttaaaataaggaataagtcatccatttgttttatatacctaatttatctttaaaaaatttcatatgatcgttatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38192236 |
ttatcaagcaactctattttcgtttaaaataaggaataagtcatccatttgttttatatgcctaatttatctttaaaaaatttcatatgatcgttatttt |
38192137 |
T |
|
| Q |
101 |
ccaattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatgatttgaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38192136 |
ccaatttttagattaaaaatctacatttggagaagtcgcacatggat----ttcaaaggcgaagaagaaactatgcaaagttttttcataatgatttgaa |
38192041 |
T |
|
| Q |
201 |
atatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaagaaaattacattcagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38192040 |
atatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttaactagtcacatgttaaggaaagcaaattcacttaagaaaattacattcagt |
38191941 |
T |
|
| Q |
301 |
tctcgttacaaattctatataggagcttgtagatggactaatggctcagatggctgttgttggtttgaacgaaatcttattcttaagatgcttaaagatg |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38191940 |
tctcgttacaaattctatacaggagcttgtagatggactaatggctcagatggctgttgttagtttgaacgaaatcttattcttaagatgcttaaagatg |
38191841 |
T |
|
| Q |
401 |
aagtacctagccaatgtcaacttataattttctagggttattctatttatttataatgaattttgtggtgatcttagtgaattc |
484 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38191840 |
aagtacctggccaatgtcaacttataattttctagggttattctatttatttataatgaattttgtggtgatcttagtgaattc |
38191757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 38185980 - 38185513
Alignment:
| Q |
17 |
ttttcgtttaaaataaggaataagtcatccatttgttttatatacctaatttatctttaaaaaatttcatatgatcgttattttccaattttcagattaa |
116 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||||||||| | |||| ||| ||| ||||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
38185980 |
tttttgttttaaataagaaataagtcatccatttgttttatatgcataatgtatattttaaaaaattcatatgatttttatttttcaattttcagattaa |
38185881 |
T |
|
| Q |
117 |
aaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatgatttgaaatatgttgagttacgt |
216 |
Q |
| |
|
||||||||| || || ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||| | |
|
|
| T |
38185880 |
aaatctacaattagaaaagtcgcacatgggtagatttcaaaggcgaagaagaaattatgcaaagttttttcataatgatttaaaatttgtagagttacat |
38185781 |
T |
|
| Q |
217 |
ggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaagaaaattacattcagttctcgttacaaattct |
316 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
38185780 |
gggtgtgtttgctccaaaaatgtaattgagttagctagtcacatgttaaggcaaggaaattcacttaagaaaattacattcacttctcataccaaattct |
38185681 |
T |
|
| Q |
317 |
atataggagcttgtagatggactaatggctcagatggctgttgttggtttgaacgaaatcttattcttaagatgcttaaagatgaagtacctagccaatg |
416 |
Q |
| |
|
||| ||| ||| |||||||||||||| |||||||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
38185680 |
atacaggtgctgatagatggactaatgactcagatgattgttgttggtttgaatggaatgatattcataagatgcttaaagatgaagtacttcaccaatg |
38185581 |
T |
|
| Q |
417 |
tcaacttataattttctagggttattctatttatttataatgaattttgtggtgatcttagtgaattc |
484 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
38185580 |
tcaacttataattttctagggttattttatttatttataatgaatttagtagtgatcttagggaattc |
38185513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 94 - 484
Target Start/End: Complemental strand, 38155668 - 38155278
Alignment:
| Q |
94 |
ttattttccaattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatg |
193 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||||| || || ||||||| ||||||| | |||| ||||||||| ||||||| |||| |||||||| |
|
|
| T |
38155668 |
ttatttttctattttcagattagaaatctacatttggaaaattcacacatgggtggatttaagaggcaaagaagaaatcatgcaaaattttgtcataatg |
38155569 |
T |
|
| Q |
194 |
atttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaagaaaattac |
293 |
Q |
| |
|
| ||||||||||| || || |||||||| |||||||| |||| ||||||||||||||||||| | || |||||||||||||| |||||| ||||||| |
|
|
| T |
38155568 |
agttgaaatatgtagactttcgtggttgtgtttgctccataaatataattgagttagctagtcagctattgaggaaagcaaattctcttaagcaaattac |
38155469 |
T |
|
| Q |
294 |
attcagttctcgttacaaattctatataggagcttgtagatggactaatggctcagatggctgttgttggtttgaacgaaatcttattcttaagatgctt |
393 |
Q |
| |
|
|| ||||| || |||||||||||| ||||||| || |||||||||||| ||| |||| |||||| |||||||||| ||||| |||| |||||||||| |
|
|
| T |
38155468 |
ttttggttctagtgacaaattctatacaggagctggtggatggactaatgactctaatggttgttgtcggtttgaacggaatctaattcataagatgctt |
38155369 |
T |
|
| Q |
394 |
aaagatgaagtacctagccaatgtcaacttataattttctagggttattctatttatttataatgaattttgtggtgatcttagtgaattc |
484 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||| ||||| ||||| |
|
|
| T |
38155368 |
aaagatgaagtacatgaacaatgtcaacttataattttctaaatttattttatttatttataatgaagtttgtagtgacattagttaattc |
38155278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 165 - 442
Target Start/End: Complemental strand, 36741736 - 36741462
Alignment:
| Q |
165 |
aagaaactatgcaaagttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgtta |
264 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| || ||| |||| ||||| ||||| ||||| | || |
|
|
| T |
36741736 |
aagaaaatatgcagagttttctcataatgatttgaaatatgtggagttttgtggttgtgttttctctgcggatgttattgaattagcaagtcaactattg |
36741637 |
T |
|
| Q |
265 |
aggaaagcaaattcacttaagaaaattacattcagttctcgttacaaattctatataggagcttgtagatggactaatggctcagatggctgttgttggt |
364 |
Q |
| |
|
||||| |||||||| ||||| ||||| || |||||||||| | |||||||||||||||| ||| |||||||||||| |||||| |||| ||||| | |
|
|
| T |
36741636 |
aggaatgcaaattcgcttaacaaaatgactttcagttctcttcacaaattctatataggtgctggtagatggactagtggctctgatg---gttgtctgc |
36741540 |
T |
|
| Q |
365 |
ttgaacgaaatcttattcttaagatgcttaaagatgaagtacctagccaatgtcaacttataattttctagggttatt |
442 |
Q |
| |
|
||| || |||| ||||| | |||||||||||||||||||| || |||||||||||||||||||| ||| |||||| |
|
|
| T |
36741539 |
ttggacaaaatgttatttatgagatgcttaaagatgaagtaaataaacaatgtcaacttataattttgtagtgttatt |
36741462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 94 - 336
Target Start/End: Original strand, 42800609 - 42800848
Alignment:
| Q |
94 |
ttattttccaattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatg |
193 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||| | || ||||||| ||||||| | |||| || |||| | |||||| ||||||||||||| |
|
|
| T |
42800609 |
ttattttttaattttcagattcaaaatctacacccggaacattcacacatggttggatttaagaggcaaaaaagagaatatgca---ttttttcataatg |
42800705 |
T |
|
| Q |
194 |
atttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaagaaaattac |
293 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||| ||| || |||||||||||||||||| | || |||| |||||||| |||| ||||| || |
|
|
| T |
42800706 |
atttgaaatatgtggagtttcgtggttgtgtttgctccacaaacgttattgagttagctagtcacctattgaggagtgcaaattcgcttagaaaaatgac |
42800805 |
T |
|
| Q |
294 |
attcagttctcgttacaaattctatataggagcttgtagatgg |
336 |
Q |
| |
|
|||| ||||||| ||||| ||||||| |||||| |||||||| |
|
|
| T |
42800806 |
tttcaattctcgtgacaaagtctatattggagctggtagatgg |
42800848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 338
Target Start/End: Complemental strand, 35096840 - 35096588
Alignment:
| Q |
86 |
tatgatcgttattttccaattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttt |
185 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| | ||| ||| | || || || ||||||||| | |||| || |||| | ||| | ||||| |
|
|
| T |
35096840 |
tatgatcgttatttttcaattttcagattagaaatgtgcatccggaacattcacatatagatggatttaagaggcaaaaaagagaatatacggggttttc |
35096741 |
T |
|
| Q |
186 |
tcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaag |
285 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| | |||| | |||||| |||||||||||||||||| | || |||| ||||||||||||| | |
|
|
| T |
35096740 |
tcataacgatttgaaatatgttgaattccgtggttgtgttggctctataaatgttattgagttagctagtcacttattgaggagtgcaaattcacttagg |
35096641 |
T |
|
| Q |
286 |
aaaattacattcagttctcgttacaaattctatataggagcttgtagatggac |
338 |
Q |
| |
|
||||| || |||||||||||| ||||| ||||| |||||| |||||||||| |
|
|
| T |
35096640 |
aaaatgactttcagttctcgtgacaaagcgtatattggagctggtagatggac |
35096588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 338
Target Start/End: Complemental strand, 38284039 - 38283858
Alignment:
| Q |
157 |
aggcgaagaagaaactatgcaaagttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtc |
256 |
Q |
| |
|
|||| ||||||| | |||||| ||||| ||||||||||||||||||||||||||||| ||| || | ||| ||| ||||||||||||||| ||||||| |
|
|
| T |
38284039 |
aggcaaagaagagaatatgcagggttttctcataatgatttgaaatatgttgagttacatggctgtatgtgcgccataaatgtaattgagttggctagtc |
38283940 |
T |
|
| Q |
257 |
acatgttaaggaaagcaaattcacttaagaaaattacattcagttctcgttacaaattctatataggagcttgtagatggac |
338 |
Q |
| |
|
|||| || ||||| | ||||||||||| |||||||||||||| || || | |||||||| | ||| ||| | |||||||| |
|
|
| T |
38283939 |
acatattgaggaatgtgaattcacttaaacaaattacattcagtcctggtgaaaaattctacagaggtgctggaagatggac |
38283858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 38146868 - 38146731
Alignment:
| Q |
181 |
ttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcac |
280 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||||| | ||| |||| ||||||||||||||||||||| | | ||||| || ||||||| || |
|
|
| T |
38146868 |
ttttttcataatgacttgaaatatgtagagttatgtggttgtatttgttccataaatgtaattgagttagctagcaatctattaagaaacgcaaatttac |
38146769 |
T |
|
| Q |
281 |
ttaagaaaattacattcagttctcgttacaaattctat |
318 |
Q |
| |
|
|||| ||||||| || ||||||||| | ||||||||| |
|
|
| T |
38146768 |
ttaaacaaattacttttagttctcgtgaaaaattctat |
38146731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 86 - 318
Target Start/End: Original strand, 45581865 - 45582097
Alignment:
| Q |
86 |
tatgatcgttattttccaattttcagattaaaaatctacatttggaga-agtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagtttt |
184 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| | ||||| || ||| |||| || |||| ||||||| | ||| | |||| | | |||| ||||| |
|
|
| T |
45581865 |
tatgatcattatttttcaattttcagattaaaattttacatctg-agacagtcacatatggttggatttaagaggaagaaaagagaatgtgcagggtttt |
45581963 |
T |
|
| Q |
185 |
ttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaa |
284 |
Q |
| |
|
||||||||||||||||||||| || || | |||||| |||||||| ||||| |||||||| |||| |||||| || ||||| | |||||| ||||| |
|
|
| T |
45581964 |
gtcataatgatttgaaatatgtggaatttcatggttgtgtttgctccattaatgttattgagttggctaatcacatattgaggaatgtaaattcgcttaa |
45582063 |
T |
|
| Q |
285 |
gaaaattacattcagttctcgttacaaattctat |
318 |
Q |
| |
|
|||||| || |||||| ||||| ||||||||||| |
|
|
| T |
45582064 |
gaaaatgactttcagtcctcgtgacaaattctat |
45582097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 338
Target Start/End: Complemental strand, 35070804 - 35070552
Alignment:
| Q |
86 |
tatgatcgttattttccaattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttt |
185 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| | ||| ||| | || || || |||| |||| | |||| || |||| | ||| || ||||| |
|
|
| T |
35070804 |
tatgatcgttattttttaattttcagattagaaatatgcatccggaacattcacatatagatgaatttaagaggcaaaaaagagaatatacagggttttc |
35070705 |
T |
|
| Q |
186 |
tcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaag |
285 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| | |||| | |||||| |||||||||||||||||| | || | || ||||||||||||| |
|
|
| T |
35070704 |
tcataacgatttgaaatatgttgaatttcgtggttgtgttggctctataaatgttattgagttagctagtcacttattgaagagtgcaaattcacttaga |
35070605 |
T |
|
| Q |
286 |
aaaattacattcagttctcgttacaaattctatataggagcttgtagatggac |
338 |
Q |
| |
|
||||| || |||||||||||| ||||| ||||| |||||| |||||||||| |
|
|
| T |
35070604 |
aaaatgactttcagttctcgtgacaaagcgtatattggagctggtagatggac |
35070552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 42835364 - 42835521
Alignment:
| Q |
180 |
gttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattca |
279 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||| ||||||| ||| || |||||||||||||||||| | || || | ||||||||| |
|
|
| T |
42835364 |
gttttttcataatgatttgaaatatgtggatttttgtggttgtgtttgctccgcaaacgttattgagttagctagtcacttattgagtagtgcaaattca |
42835463 |
T |
|
| Q |
280 |
cttaagaaaattacattcagttctcgttacaaattctatataggagcttgtagatgga |
337 |
Q |
| |
|
|||| ||||| || ||||||||| || ||||| |||||| |||| | ||||||||| |
|
|
| T |
42835464 |
cttagaaaaatgactttcagttctagtgacaaaggctatattggagttggtagatgga |
42835521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 338
Target Start/End: Complemental strand, 35093592 - 35093340
Alignment:
| Q |
86 |
tatgatcgttattttccaattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttt |
185 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||| | || || || | ||||||| | || | || |||| | ||| ||||| |
|
|
| T |
35093592 |
tatgatcgttatttttcaattttcagattagaaatctacattgggaacattcacatatagttggatttaagagacaaaaaagagaatataaggggttttc |
35093493 |
T |
|
| Q |
186 |
tcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaag |
285 |
Q |
| |
|
|||||| |||||||| |||| || || | |||||| | |||||| |||||| ||||||||||||||| || | || | || |||| ||||||||| |
|
|
| T |
35093492 |
tcataactatttgaaacatgtggaatttcatggttgtgttggctccataaatgttattgagttagctagtgacttattgatgactgcaacttcacttaaa |
35093393 |
T |
|
| Q |
286 |
aaaattacattcagttctcgttacaaattctatataggagcttgtagatggac |
338 |
Q |
| |
|
||||| | |||||||||||| ||||| |||||| |||||| |||||||||| |
|
|
| T |
35093392 |
aaaatgattttcagttctcgtgacaaagcctatattggagctggtagatggac |
35093340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 38169984 - 38169824
Alignment:
| Q |
181 |
ttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcac |
280 |
Q |
| |
|
||||||||||||||||||||||| || || || | ||| || ||| | | ||| ||||| ||||| ||||||||| |||| ||||| ||| |||| | |
|
|
| T |
38169984 |
ttttttcataatgatttgaaatacgtagaattgcatggctgtgtgtgcacaataaacgtaatcgagttggctagtcacttgttgaggaacgcatattcgc |
38169885 |
T |
|
| Q |
281 |
ttaagaaaattacattcagttctcgttacaaattctatataggagcttgtagatggactaa |
341 |
Q |
| |
|
||||||||||||| || ||||||| | ||||||| ||||| || ||| | ||||||||||| |
|
|
| T |
38169884 |
ttaagaaaattacttttagttctcttgacaaattttatatgggtgctggaagatggactaa |
38169824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 338
Target Start/End: Complemental strand, 35079408 - 35079250
Alignment:
| Q |
180 |
gttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattca |
279 |
Q |
| |
|
||||| |||||| ||||||||| |||| || || | |||||| | |||||| |||||| ||||||||||||| | || | || |||| |||| |||| |
|
|
| T |
35079408 |
gttttctcataacgatttgaaacatgtggaatttcatggttgtgttggctccataaatgttattgagttagctaatgacttattgaggagtgcaacttca |
35079309 |
T |
|
| Q |
280 |
cttaagaaaattacattcagttctcgttacaaattctatataggagcttgtagatggac |
338 |
Q |
| |
|
||||| ||||| | |||||||||||| ||||| |||||| |||||| |||||||||| |
|
|
| T |
35079308 |
cttaataaaatgattttcagttctcgtgacaaagcctatattggagctggtagatggac |
35079250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 333
Target Start/End: Original strand, 43029583 - 43029830
Alignment:
| Q |
86 |
tatgatcgttattttccaattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttt |
185 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| ||| | || || || | ||||||| |||| || |||| | | | || ||||| |
|
|
| T |
43029583 |
tatgatcgttatatttcaattttcagattaaaaatctacatccggaacattcacatatagttggatttatgaggcaaaaaagagaatgtacagggttttc |
43029682 |
T |
|
| Q |
186 |
tcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaag |
285 |
Q |
| |
|
||||| ||||||||||||| || || |||||||| | |||||| |||||| ||||||||||||||||| | || |||| |||| ||| ||| |
|
|
| T |
43029683 |
tcataccaatttgaaatatgtggaatttcgtggttgtgttggctccataaatgttgttgagttagctagtcacctattgaggagtgcaacttcgcttgga |
43029782 |
T |
|
| Q |
286 |
aaaattacattcagttctcgttacaaattctatataggagcttgtaga |
333 |
Q |
| |
|
||||| || |||||||||||| ||||| |||||| |||||| ||||| |
|
|
| T |
43029783 |
aaaatgactttcagttctcgtgacaaagcctatattggagctggtaga |
43029830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 34150794 - 34150904
Alignment:
| Q |
180 |
gttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattca |
279 |
Q |
| |
|
||||| |||||||| |||| ||||||| ||||| ||||| || |||||||| |||||| |||||||||||| |||| | || |||| |||||||| |
|
|
| T |
34150794 |
gttttctcataatgttttggaatatgtggagtttcgtggctgtgtttgctccataaatgtttttgagttagctactcacttattgaggagtgcaaattcg |
34150893 |
T |
|
| Q |
280 |
cttaagaaaat |
290 |
Q |
| |
|
||||||||||| |
|
|
| T |
34150894 |
cttaagaaaat |
34150904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 34176330 - 34176220
Alignment:
| Q |
180 |
gttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattca |
279 |
Q |
| |
|
||||| |||||||| |||| ||||||| ||||| ||||| || |||||||| |||||| |||||||||||| |||| | || |||| |||||||| |
|
|
| T |
34176330 |
gttttctcataatgttttggaatatgtggagtttcgtggctgtgtttgctccataaatgtttttgagttagctactcacttattgaggagtgcaaattcg |
34176231 |
T |
|
| Q |
280 |
cttaagaaaat |
290 |
Q |
| |
|
||||||||||| |
|
|
| T |
34176230 |
cttaagaaaat |
34176220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 38146957 - 38146911
Alignment:
| Q |
18 |
tttcgtttaaaataaggaataagtcatccatttgttttatataccta |
64 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||| |||| |
|
|
| T |
38146957 |
tttcgtttaaaatgatgaataagtcatccatttgttgtatatgccta |
38146911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 38323881 - 38323959
Alignment:
| Q |
180 |
gttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcac |
258 |
Q |
| |
|
||||||| |||||||||| |||||||| || ||||||||||| |||||| | ||| ||||||||||||||| |||| |
|
|
| T |
38323881 |
gttttttgataatgatttaaaatatgtggaattacgtggttgtgtttgctcaatgaatataattgagttagctactcac |
38323959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 44958507 - 44958600
Alignment:
| Q |
195 |
tttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcacttaagaaa |
288 |
Q |
| |
|
|||||||||||| || || | |||||| |||||||| |||||| ||||||||||||| |||| | || | ||| ||||||||||||||||| |
|
|
| T |
44958507 |
tttgaaatatgtggaatttcatggttgtgtttgctccataaatgttattgagttagctaatcacctattgaagaattcaaattcacttaagaaa |
44958600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 35070468 - 35070400
Alignment:
| Q |
386 |
agatgcttaaagatgaagtacctagccaatgtcaacttataattttctagggttattctatttatttat |
454 |
Q |
| |
|
|||||||||||||||||||| | ||||| || ||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
35070468 |
agatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgttattttatttatttat |
35070400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 35079502 - 35079462
Alignment:
| Q |
86 |
tatgatcgttattttccaattttcagattaaaaatctacat |
126 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
35079502 |
tatgattgttatttttcaattttcagattagaaatctacat |
35079462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 35096504 - 35096436
Alignment:
| Q |
386 |
agatgcttaaagatgaagtacctagccaatgtcaacttataattttctagggttattctatttatttat |
454 |
Q |
| |
|
|||||||||||||||||||| | ||||| || ||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
35096504 |
agatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgttattttatttatttat |
35096436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 4161754 - 4161574
Alignment:
| Q |
143 |
tggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaat |
242 |
Q |
| |
|
||||||||| ||| |||| ||||||| | ||| |||||||||||||||| ||||||||||||| |||||||||||||| |||| ||| | || || |
|
|
| T |
4161754 |
tggatggatctcataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggacgtgat |
4161655 |
T |
|
| Q |
243 |
tgagttagctagtcacatgttaaggaaagcaaattcacttaagaaaattacattcagttctcgttacaaattctatatagg |
323 |
Q |
| |
|
||||||||| ||||| | || ||||| | ||||| || ||| ||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
4161654 |
tgagttagccagtcatctattgaggaatgtgaattcgctcaagcaaattactttcagttcttgtgacaaattctatatagg |
4161574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 4223374 - 4223194
Alignment:
| Q |
143 |
tggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaat |
242 |
Q |
| |
|
||||||||| ||| |||| ||||||| | ||| |||||||||||||||| ||||||||||||| |||||||||||||| |||| ||| | || || |
|
|
| T |
4223374 |
tggatggatctcataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggacgtgat |
4223275 |
T |
|
| Q |
243 |
tgagttagctagtcacatgttaaggaaagcaaattcacttaagaaaattacattcagttctcgttacaaattctatatagg |
323 |
Q |
| |
|
||||||||| ||||| | || ||||| | ||||| || ||| ||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
4223274 |
tgagttagccagtcatctattgaggaatgtgaattcgctcaagcaaattactttcagttcttgtgacaaattctatatagg |
4223194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 338
Target Start/End: Complemental strand, 2220853 - 2220677
Alignment:
| Q |
162 |
aagaagaaactatgcaaagttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatg |
261 |
Q |
| |
|
||||||| | |||||| ||||| ||||||| |||||||||||||||||||||| ||||| | ||| ||| |||||||||||| || || |||||| | |
|
|
| T |
2220853 |
aagaagagaatatgcagggttttctcataattatttgaaatatgttgagttacgaggttgtatgtgcaccataaatgtaattgaattggccagtcaccta |
2220754 |
T |
|
| Q |
262 |
ttaaggaaagcaaattcacttaagaaaattacattcagttctcgttacaaattctatataggagcttgtagatggac |
338 |
Q |
| |
|
|| ||||| | ||||||||||| ||||||| |||||||||||| | |||||||| | ||| ||| | |||||||| |
|
|
| T |
2220753 |
ttgaggaatgtgaattcacttaaacaaattactttcagttctcgtgaaaaattctacagaggtgctggaagatggac |
2220677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 52215034 - 52214854
Alignment:
| Q |
143 |
tggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaat |
242 |
Q |
| |
|
||||||||| ||| |||| ||||||| | ||| |||||||||||||||| ||||||||||||| |||||||||||||| |||| ||| |||| || |
|
|
| T |
52215034 |
tggatggatctcataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggatgtgat |
52214935 |
T |
|
| Q |
243 |
tgagttagctagtcacatgttaaggaaagcaaattcacttaagaaaattacattcagttctcgttacaaattctatatagg |
323 |
Q |
| |
|
||||||||| |||| | | ||||| | ||||| || ||| ||||||| || |||||| || |||||||||||||||| |
|
|
| T |
52214934 |
tgagttagcccgtcatctactgaggaatgtgaattcgctcaagcaaattacttttagttcttgtgacaaattctatatagg |
52214854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 9666326 - 9666366
Alignment:
| Q |
86 |
tatgatcgttattttccaattttcagattaaaaatctacat |
126 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
9666326 |
tatgatcgttatttttcaattttcagattagaaatctacat |
9666366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 283
Target Start/End: Complemental strand, 12408224 - 12408044
Alignment:
| Q |
103 |
aattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatgatttgaaat |
202 |
Q |
| |
|
||||||||||| | |||| |||| |||| || ||||| |||| || | || | |||| ||||||| | |||||| | ||| |||||||| |||||||| |
|
|
| T |
12408224 |
aattttcagataagaaattcacatatggataattcgcatatggttgaacttgagaggcaaagaagagaatatgcagggatttctcataatgctttgaaat |
12408125 |
T |
|
| Q |
203 |
atgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcactta |
283 |
Q |
| |
|
|||||||| ||||||| | |||| ||| ||||| |||||||||||| ||| |||| || ||||| | |||||||||| |
|
|
| T |
12408124 |
atgttgagctacgtggctctgtttgcaccataaatgcaattgagttagccagtaacatattgaggaatgtgaattcactta |
12408044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 283
Target Start/End: Complemental strand, 12420284 - 12420104
Alignment:
| Q |
103 |
aattttcagattaaaaatctacatttggagaagtcgcacatggatggatttcaaaggcgaagaagaaactatgcaaagttttttcataatgatttgaaat |
202 |
Q |
| |
|
||||||||||| | |||| |||| |||| || ||||| |||| || | || | |||| ||||||| | |||||| | ||| |||||||| |||||||| |
|
|
| T |
12420284 |
aattttcagataagaaattcacatatggataattcgcatatggttgaacttgagaggcaaagaagagaatatgcagggatttctcataatgctttgaaat |
12420185 |
T |
|
| Q |
203 |
atgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattcactta |
283 |
Q |
| |
|
|||||||| ||||||| | |||| ||| ||||| |||||||||||| ||| |||| || ||||| | |||||||||| |
|
|
| T |
12420184 |
atgttgagctacgtggctctgtttgcaccataaatgcaattgagttagccagtaacatattgaggaatgtgaattcactta |
12420104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 20738 - 20615
Alignment:
| Q |
180 |
gttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttagctagtcacatgttaaggaaagcaaattca |
279 |
Q |
| |
|
||||| |||||||| |||| ||||||| ||||| | ||||| |||||||| |||||| ||| ||||||||| |||| | || |||| |||||||| |
|
|
| T |
20738 |
gttttctcataatgttttggaatatgtggagttttgcggttgtgtttgctccataaatgttattcagttagctactcacctattgaggagtgcaaattcg |
20639 |
T |
|
| Q |
280 |
cttaagaaaattacattcagttct |
303 |
Q |
| |
|
||||||||||| || ||| ||||| |
|
|
| T |
20638 |
cttaagaaaatgactttccgttct |
20615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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