View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7949_low_8 (Length: 473)
Name: NF7949_low_8
Description: NF7949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7949_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 29500498 - 29500836
Alignment:
| Q |
9 |
gaaatgaagccgatagataaaacagaagcaaagtcaaaaattcaaaaagcaatgctgtgactattttcacacgcattgtacgacaggtggcactgtttat |
108 |
Q |
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| T |
29500498 |
gaaacgaagccgatagataaagcacaagcaaagtcaaaaattcaaaaagcaatgctgtgactattttcacacgcattgtacgacaggtggcactgtttat |
29500597 |
T |
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| Q |
109 |
tctcccaattcacaatttcaccttccataatccattttttcttctataaaa-attcaatttctctcacccaatcaaaaccatatattattatcaacattt |
207 |
Q |
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| T |
29500598 |
tctcccaattcacaattttaccttccataatccattttttcttctataaaaaattcaatttctctcacccaatcaaaaccatatattattatcaacattt |
29500697 |
T |
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| Q |
208 |
tatttttcattcttcctttcttgcccgaccatctgagtatagaacgatccctacatctcctcctccaccatcgcttgacagttattttccatttttgtcc |
307 |
Q |
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| T |
29500698 |
tatttttcattcttcctttcttgcacgaccatctgagtatagaacgatccctacatctcctcctccaccatcgcttgacagttattttccatatttgtcc |
29500797 |
T |
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| Q |
308 |
tttcaagctttaagccgtagaacaaaaaacaatggttag |
346 |
Q |
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| T |
29500798 |
tttcaagcttcaagccgtagaacaaaaaacaatggttag |
29500836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 29500907 - 29500951
Alignment:
| Q |
417 |
gtaactgtgaatccttcaccaaacagaaaataatcaactcaattg |
461 |
Q |
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| T |
29500907 |
gtaactgtgaatccttcaccaaacagaaaataatcaactgaattg |
29500951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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