View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7950_high_10 (Length: 475)

Name: NF7950_high_10
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7950_high_10
NF7950_high_10
[»] chr2 (1 HSPs)
chr2 (21-456)||(33637316-33637751)
[»] scaffold0267 (2 HSPs)
scaffold0267 (27-126)||(13366-13465)
scaffold0267 (285-454)||(13615-13785)
[»] chr3 (2 HSPs)
chr3 (27-122)||(3837885-3837980)
chr3 (285-454)||(3838134-3838304)
[»] chr7 (3 HSPs)
chr7 (41-122)||(20475969-20476050)
chr7 (300-442)||(20475663-20475806)
chr7 (45-97)||(15571919-15571971)
[»] scaffold0128 (2 HSPs)
scaffold0128 (23-123)||(34021-34121)
scaffold0128 (234-360)||(33781-33907)
[»] chr4 (4 HSPs)
chr4 (23-123)||(13784358-13784458)
chr4 (234-355)||(13784126-13784247)
chr4 (54-98)||(10553569-10553613)
chr4 (54-98)||(10571299-10571343)
[»] chr8 (5 HSPs)
chr8 (23-116)||(40794177-40794270)
chr8 (235-363)||(29125102-29125230)
chr8 (28-119)||(29124882-29124973)
chr8 (51-102)||(29126468-29126519)
chr8 (294-460)||(29126661-29126827)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 21 - 456
Target Start/End: Complemental strand, 33637751 - 33637316
Alignment:
Q  21 tgtgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagcta 120  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637751 tgtgcctttattatgtccacatgagaacccatcttgttttgtgagaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagcta 33637652  T
Q  121 tgttcaattgggtatttctatgaatctcaatttagttgattggttgtttccggtttgtctctctgaaaatggaaatgtcatgttgatggctagcaaagga 220  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33637651 tgttcaattgggtatttgtgtgaatctcaatttagttgattggttgtttccggtttgtctctctgaaaatggaaatgtcatgttgctggctagcaaagga 33637552  T
Q  221 gcttttgatgatattattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaaga 320  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637551 gcttttgatgatattagtatgtataataggagagatgatagagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaaga 33637452  T
Q  321 gcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattttgaatttatgttaggtcgtgcaagtagtgtgatgactatta 420  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637451 gcttggtttttccccgtcctcttccacattaagcttctatgcaacaattgtttgtattttgaatttatgttaggtcgtgcaagtagtgtgatgactatta 33637352  T
Q  421 atggttccttaattgtgttttcaatagatagtttaa 456  Q
    ||||||||||||||||||||||||||||||||||||    
T  33637351 atggttccttaattgtgttttcaatagatagtttaa 33637316  T

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Target: scaffold0267 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 13366 - 13465
Alignment:
Q  27 tttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatgttca 126  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  13366 tttattataaccacatgagaacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggactcagttggtgaatgttagctatgttca 13465  T

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Target: scaffold0267; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 285 - 454
Target Start/End: Original strand, 13615 - 13785
Alignment:
Q  285 acaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaa 383  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||   ||||| |||||||||| ||  |||||||||| ||||||| ||| ||||    
T  13615 acaaccaaattcgttatgctgatgaacatatgcagagcttggttttgccttgtcctcgtccacattaatctcgtatgcaacaaatgtttgtttttctgaa 13714  T
Q  384 tttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagttt 454  Q
    |||||||||||| |||||  | |  ||||  ||||| ||||||| |||||| |||||||  ||||||||||    
T  13715 tttatgttaggttgtgcatttggcatgatatctattgatggttctttaattatgttttccttagatagttt 13785  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 3837885 - 3837980
Alignment:
Q  27 tttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 122  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  3837885 tttattataaccacatgagaacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggactcagttggtgaatgttagctatg 3837980  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 285 - 454
Target Start/End: Original strand, 3838134 - 3838304
Alignment:
Q  285 acaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaa 383  Q
    ||||||||||| | |||||||| ||||||||| ||||||||||||||||   ||||| |||||||||| ||  |||||||||||||||||| ||| ||||    
T  3838134 acaaccaaattcgttatgctgaggaacatatgcagagcttggttttgccttgtcctcatccacattaatctcgtatgcaacaactgtttgtttttctgaa 3838233  T
Q  384 tttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagttt 454  Q
    ||||||||||||  ||||  | |  ||||  ||||| ||||||| |||||| |||||||  ||||||||||    
T  3838234 tttatgttaggttttgcatttggcatgatatctattgatggttctttaattatgttttccttagatagttt 3838304  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 20476050 - 20475969
Alignment:
Q  41 atgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 122  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  20476050 atgagaacccattttgttttgtgggaaatgagagagtttggggttcaagagtcttggactcggttggtgaatgttagctatg 20475969  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 442
Target Start/End: Complemental strand, 20475806 - 20475663
Alignment:
Q  300 atgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaatttatgttaggtcgt 398  Q
    ||||| |||| |||||| |||||||||||||||| | ||||  |||| |||||||| | ||||||||||| ||| | ||| ||||||||| |||| |  |    
T  20475806 atgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaaattaagctgcaatgcaacaactatttatttttctgaatttattttagattat 20475707  T
Q  399 gcaagtagtgtgatgactattaatggttccttaattgtgttttc 442  Q
    | |||| |  || | || ||| |||||| |||||||||||||||    
T  20475706 gtaagtggcatgtttacgattgatggttacttaattgtgttttc 20475663  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 15571971 - 15571919
Alignment:
Q  45 gaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttgg 97  Q
    ||||| |||||||  ||||| ||||||| |||||||||||| |||||||||||    
T  15571971 gaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgg 15571919  T

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Target: scaffold0128 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 34121 - 34021
Alignment:
Q  23 tgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 122  Q
    |||||||||||||  || ||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| || ||||    
T  34121 tgcctttattatgatcatatgagaacacattttgttttgtgggaaatgagagagtatggagttcaagaatcttggactcggttggtgaatgtcagttatg 34022  T
Q  123 t 123  Q
    |    
T  34021 t 34021  T

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Target: scaffold0128; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 360
Target Start/End: Complemental strand, 33907 - 33781
Alignment:
Q  234 ttattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgcc 333  Q
    |||||||||||||| |||||||||||| || | ||  | ||  ||||| | ||||||||||||||   || ||||||||||||   ||||||||||||||    
T  33907 ttattatgtataatcggagagatgatatagttcaatttcttcgacttcctaacaaccaaatttgggcggccgatgaacatatgcgtagcttggttttgcc 33808  T
Q  334 ccatcctcttccacattaagcttctat 360  Q
     | ||||| ||||||||||||| ||||    
T  33807 tcgtcctcatccacattaagctcctat 33781  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 13784458 - 13784358
Alignment:
Q  23 tgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 122  Q
    |||||||||||||  || ||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| || ||||    
T  13784458 tgcctttattatgatcaaatgagaacacattttgttttgtgggaaatgagagagtatggagttcaagaatcttggactcggttggtgaatgtcagttatg 13784359  T
Q  123 t 123  Q
    |    
T  13784358 t 13784358  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 355
Target Start/End: Complemental strand, 13784247 - 13784126
Alignment:
Q  234 ttattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgcc 333  Q
    |||||||||||||| |||||||||||| || ||||  | || || ||| | ||||| ||||||||   || |||||||||||| | ||||||||||||||    
T  13784247 ttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaacaaaatttgggcggccgatgaacatatgcatagcttggttttgcc 13784148  T
Q  334 ccatcctcttccacattaagct 355  Q
     ||| ||| |||||||||||||    
T  13784147 tcattctcatccacattaagct 13784126  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 10553613 - 10553569
Alignment:
Q  54 ttgttttgtgggaaatgagagagtttggagttcaagagtcttgga 98  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||||    
T  10553613 ttgttttatggaaaatgacagattttggagttcaagagtcttgga 10553569  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 10571343 - 10571299
Alignment:
Q  54 ttgttttgtgggaaatgagagagtttggagttcaagagtcttgga 98  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||||    
T  10571343 ttgttttatggaaaatgacagattttggagttcaagagtcttgga 10571299  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 40794270 - 40794177
Alignment:
Q  23 tgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgtta 116  Q
    |||||||||||||   ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||    
T  40794270 tgcctttattatgattacatgagaacacattttgttttgtgggaaatgagagagtttggagttcaagaatcttggactcggttgatggatgtta 40794177  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 235 - 363
Target Start/End: Original strand, 29125102 - 29125230
Alignment:
Q  235 tattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccc 334  Q
    ||||||||||| |||||||||||||| || |   ||||||  ||||||  || ||||||||  ||||||| ||||||||||| |||| |||||||||||     
T  29125102 tattatgtatagtaggagagatgatagagttagtcatattagacttctcaaccaccaaattatgtatgctcatgaacatatgtagagtttggttttgcct 29125201  T
Q  335 catcctcttccacattaagcttctatgca 363  Q
    | ||||| ||| |||||||||||||||||    
T  29125202 cttcctcatccgcattaagcttctatgca 29125230  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 29124882 - 29124973
Alignment:
Q  28 ttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagct 119  Q
    |||||||| ||| ||||||||| ||||   |||||||| ||||||||||||||||||||||||||||||||| |  ||||||||| ||||||    
T  29124882 ttattatgaccagatgagaacccatttcactttgtggggaatgagagagtttggagttcaagagtcttggacccacttggtgaatattagct 29124973  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 29126468 - 29126519
Alignment:
Q  51 attttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcg 102  Q
    ||||| ||||| | ||||||||||||||||||||| ||||||||||||||||    
T  29126468 attttattttgggtgaaatgagagagtttggagtttaagagtcttggactcg 29126519  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 460
Target Start/End: Original strand, 29126661 - 29126827
Alignment:
Q  294 tttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttg-tattttgaatttatgtta 392  Q
    |||||||||  | |||||||||| | |||||| ||||||| ||||   |||| |||||| |||||||||||||||  |||| | |||| ||| ||  |||    
T  29126661 tttggtatgtcggtgaacatatgcatagcttgattttgcctcatctcattcc-cattaaacttctatgcaacaacaatttgatttttttaatatacatta 29126759  T
Q  393 ggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaattat 460  Q
     || |||||||| ||||||| |||||| |   ||||||||||||||||||  || ||||||| |||||    
T  29126760 agttgtgcaagtggtgtgataactattgaatattccttaattgtgttttccttaaatagtttgattat 29126827  T

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