View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_16 (Length: 385)
Name: NF7950_high_16
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 368
Target Start/End: Original strand, 44038883 - 44039237
Alignment:
| Q |
7 |
ctagtcggtcataataataaaagtaaattgcaatatgaatatgaattcagggtttaaagtttaaactgcgacattg-cattctaaataattttttcttca |
105 |
Q |
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| T |
44038883 |
ctagtcggtcataataataaaagtaaattgcaatatgaatatgaattcagggtttaaagtttaaactgcgacattgacattctaaataattttttcttca |
44038982 |
T |
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| Q |
106 |
attataaccctcaaattaacatcccatgttcaacgatttccatccactttaattttttggatccaatactaaagcaaaactgtttcctcacatggaaaac |
205 |
Q |
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| T |
44038983 |
attataaccctcaaattaacatcccaggttcaacgatttccatccacttt-----tttggatccaatactaaagcaaaactgtttcctcacatggaaaac |
44039077 |
T |
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| Q |
206 |
ttagctaaggcacaataggtggtacaccaataatatcaaaaattcgatttgataatacaacttggccaaagtaagtaaagcgtaataaacatgtatgttt |
305 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44039078 |
ttagctaaggcacaataggt---acaccaatagtatcaaaaattcgatttgataatacaacttgaccaaagtaagtaaagcgtaataaacatgtatgttt |
44039174 |
T |
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| Q |
306 |
gagacaaaataaagttgacaagattagtagaagcataacaaccatatatacacacgtgaaaag |
368 |
Q |
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| T |
44039175 |
gagacaaaataaagttgacaagattagtagaagcataacaaccatatatacacacgtgaaaag |
44039237 |
T |
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