View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7950_high_18 (Length: 381)
Name: NF7950_high_18
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 42724053 - 42723691
Alignment:
| Q |
1 |
gagaaagaagcgatgtttgagaaaccattaacaccaagcgatgtagggaagttgaaccgactcgttattccaaaacaacatgctgagagatatttcccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42724053 |
gagaaagaagcgatgtttgagaaaccattaacaccaagcgatgtagggaagttgaaccgactcgttattccaaaacaacatgctgagagatatttcccac |
42723954 |
T |
|
| Q |
101 |
tagactcagaagaaatcaaaggcttgttactgagtttcgaggatgagtcaggtaagtgttggaggttccggtattcgtattggaatagtagtcaaagcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42723953 |
tagactcagaagaaatcaaaggcttgttactgagtttcgaggatgagtcaggtaagtgttggaggttccggtattcgtattggaatagtagtcaaagcta |
42723854 |
T |
|
| Q |
201 |
tgttcttacaaaaggttggagtcgttatgttaaagataaacgtcttgatgctggtgatgttgttttgtttcaaagacaccgtatacatcctcaaaggttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42723853 |
tgttcttacaaaaggttggagtcgttatgttaaagataaacgtcttgatgctggtgatgttgttttgtttcaaagacaccgtatacatcctcaaaggttg |
42723754 |
T |
|
| Q |
301 |
tttatctcatggaggcgccgccatggtagtaactctactccaccggctcatgttagtagatcc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42723753 |
tttatctcatggaggcgccgccatggtagtaactctactccaccggctcatgttagcagatcc |
42723691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 25690945 - 25691088
Alignment:
| Q |
127 |
ttactgagtttcgaggatgagtcaggtaagtgttggaggttccggtattcgtattggaatagtagtcaaagctatgttcttacaaaaggttggagtcgtt |
226 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||||||| | ||||| || || |||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25690945 |
ttactaagttttgaagatgagtcagggaagtgttggcgtttccgttactcttattggaacagtagtcaaagctatgttctaacaaaaggttggagtcgtt |
25691044 |
T |
|
| Q |
227 |
atgttaaagataaacgtcttgatgctggtgatgttgttttgttt |
270 |
Q |
| |
|
|||| ||||||||||| || |||||||| ||||| ||| ||||| |
|
|
| T |
25691045 |
atgtcaaagataaacgactcgatgctggcgatgtcgttctgttt |
25691088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 8775094 - 8774999
Alignment:
| Q |
178 |
tattggaatagtagtcaaagctatgttcttacaaaaggttggagtcgttatgttaaagataaacgtcttgatgctggtgatgttgttttgtttcaa |
273 |
Q |
| |
|
|||||||| ||||| |||||||||||| | |||||||||||||| |||| ||||||||| ||| ||||||||||| || |||||| ||||||| |
|
|
| T |
8775094 |
tattggaacagtagccaaagctatgttatgacaaaaggttggagccgttttgttaaagagaaaaaacttgatgctggcgacattgtttcgtttcaa |
8774999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University