View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_19 (Length: 381)
Name: NF7950_high_19
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 38129952 - 38130318
Alignment:
| Q |
1 |
ttaagcacaaaccagtgaaatttgatatggtcattcttgcatattcttttttggtagtggcaactttgtgtcaagtattttcttttctaagctaagaaat |
100 |
Q |
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| T |
38129952 |
ttaagcacaaaccagtgaaatttgatatggtcattcttgcatattcttttttggtagtggcaactttgtgtcaagtattttcttttctatgataagaaat |
38130051 |
T |
|
| Q |
101 |
atattgaagtgtgtgttatgtaataacttatcatttgcagtgtgtatgcttctggacgttgtctttaatctattagatgtatgctgctgatgagacttca |
200 |
Q |
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| T |
38130052 |
atattgaagtgtgtgttatgtaataacttatcatttgcattgtgcatgcttctggacattgtctttaatctattagaagtatgctgctgatgagacttca |
38130151 |
T |
|
| Q |
201 |
gaagtgaactctttcttcaaaatattaggccttttgttgggttgcagttgatctataaccaaaacaattcacattaacaacaaatttcctaagatgaata |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
38130152 |
gaagtgaactctttcttcaaaatcttaggccttttgttgggttgcagttgatctataaccaaaacaattcaccttaaaaacaaatttcctaagatgaata |
38130251 |
T |
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| Q |
301 |
aagtcatcaatcaccagccttataggaaccttcaccgctattaacaaaggaataatgtcatagttgt |
367 |
Q |
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| T |
38130252 |
aagtcatcaatcaccagccttataggaaccttcaccactattaacaaaggaataatgtcatagttgt |
38130318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 354
Target Start/End: Complemental strand, 38314900 - 38314746
Alignment:
| Q |
202 |
aagtgaactctttcttcaaaatattaggccttttgttgggttgcagttgatctataaccaa--aacaattcacattaacaacaaatttcctaagatgaat |
299 |
Q |
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|||||| | |||||||||| || |||||| |||||||||||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||| |
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| T |
38314900 |
aagtgagcactttcttcaatattttaggctttttgttgggttccaacgaatctataaccattgaacaattcacacgaacaacaaatttcttaagatgaaa |
38314801 |
T |
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| Q |
300 |
aaagtcatcaatcaccagccttataggaaccttcaccgctattaacaaaggaata |
354 |
Q |
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||| ||| ||||||| ||| ||||||||||||||| ||| |||||||||||| |
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| T |
38314800 |
aaaatcagcaatcacaagctgaataggaaccttcaccattatcaacaaaggaata |
38314746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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