View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_20 (Length: 369)
Name: NF7950_high_20
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_20 |
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| [»] scaffold0753 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 9147568 - 9147709
Alignment:
| Q |
13 |
aatatattatatatgcatgtgtgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaa |
112 |
Q |
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| T |
9147568 |
aatatattatatgtgcatgtgtgtgggtatatgtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaa |
9147667 |
T |
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| Q |
113 |
ttgcacatatttgcatatggtcctgagcctcttaatttgcgg |
154 |
Q |
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| T |
9147668 |
ctacatatatttgcatatggtcctgcgcctcttaatttgcgg |
9147709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 9141441 - 9141576
Alignment:
| Q |
16 |
atattatatatgcatgtgtgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaattg |
115 |
Q |
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| T |
9141441 |
atattatatatgcatgtgtgtgggtatatgtgtgatattgttatgtaagaactttatgtattgttaataaataaagagatttcctctactaatagaactg |
9141540 |
T |
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| Q |
116 |
cacatatttgcatatggtcctgagcctcttaatttg |
151 |
Q |
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| T |
9141541 |
cacatatttgcatatggtcctgcgcctctttatttg |
9141576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 9309058 - 9309153
Alignment:
| Q |
171 |
ttgcaactacagtttgaatgagaaacttatctttgcatttcatgccaagaggtgcctctttttgtgttttcattgtaactacaaagtgaacatgta |
266 |
Q |
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| T |
9309058 |
ttgcaactacgctctgaaggagaaacttatctttgcattgcatgtcaggaggtgcctccttttggccttgcattgtaactacaaagtgaaaatgta |
9309153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 9133969 - 9134074
Alignment:
| Q |
184 |
ttgaatgagaaacttatctttgcatttcatgccaagaggtgcctctttttgtgttttcattgtaactacaaagtgaacatgtaaatattacacaaacatt |
283 |
Q |
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| T |
9133969 |
ttgaatgacaaaagtatctttgcattgcatgtcaggaggtgcctcctcttgggcttgcattgtaactacaatgtgaaaatgtaaatatgtcacaaacatt |
9134068 |
T |
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| Q |
284 |
gaataa |
289 |
Q |
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| T |
9134069 |
caataa |
9134074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 9156307 - 9156200
Alignment:
| Q |
164 |
ccagcctttgcaactacagtttgaatgagaaacttatctttgcatttcatgccaagaggtgcctctttttgtgttttcattgtaactacaaagtgaacat |
263 |
Q |
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| T |
9156307 |
ccaggctttgcaactatgctttgaatgagaaacttatcgatgcaatgcatgttaggaggtgccttcttttgagcttgcattgtaactacaaagtgaaaat |
9156208 |
T |
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| Q |
264 |
gtaaatat |
271 |
Q |
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| T |
9156207 |
gtaaatat |
9156200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 9300621 - 9300540
Alignment:
| Q |
190 |
gagaaacttatctttgcatttcatgccaagaggtgcctctttttgtgttttcattgtaactacaaagtgaacatgtaaatat |
271 |
Q |
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| T |
9300621 |
gagaaacttatcattgcattgcatgtcaggaggtgcctccttttagccttgcattgtaactgcaaagtgaaaatgtaaatat |
9300540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 9168212 - 9168257
Alignment:
| Q |
183 |
tttgaatgagaaacttatctttgcatttcatgccaagaggtgcctc |
228 |
Q |
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| T |
9168212 |
tttgaaggagaaacttatctttgcattgcatgtcaggaggtgcctc |
9168257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 9257631 - 9257586
Alignment:
| Q |
183 |
tttgaatgagaaacttatctttgcatttcatgccaagaggtgcctc |
228 |
Q |
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| T |
9257631 |
tttgaaggagaaacttatctttgcattgcatgtcaggaggtgcctc |
9257586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 6027 - 5916
Alignment:
| Q |
170 |
tttgcaactacagtttgaatgagaaacttatctttgcatttcatgccaagaggtgcctctttttgtgttttcattgtaactacaaagtgaacatgtaaat |
269 |
Q |
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| T |
6027 |
tttgcaactatgctttgaatgcgaagcatatctttgcattgcatgtcaagaggggcttctttttggcctagcattgtaactgcaatgtgaaaatgtaaat |
5928 |
T |
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| Q |
270 |
attacacaaaca |
281 |
Q |
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| T |
5927 |
atgacacaaaca |
5916 |
T |
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