View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_27 (Length: 327)
Name: NF7950_high_27
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_27 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 76874 - 77167
Alignment:
| Q |
18 |
ccaactaagttatggatgtttaattcttaaagaggacaaatagtgtaatgacatctacccgaaaaaaagatctttnnnnnnnnnnnnnctacccaaaata |
117 |
Q |
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| T |
76874 |
ccaactaagttatggatgtttaattcataaagaggacaaatagtgtaatgtcatctacccaaaaaaaggatctttaaaaaaaaaaat-ctacccaaaata |
76972 |
T |
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| Q |
118 |
gaaaaacaatgaagtgtcacatgtaagaaaaatgagtgcataccgttaaagatcaagggccttttggatttgattaattcctaagactatttgaatttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76973 |
gaaaaacaatgaagtgtcacatgtaagaaaaatgagtgcataccgttaaagatcaagggccttttggatttgattaattcctaagactatttgaatttat |
77072 |
T |
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| Q |
218 |
ctgtctgtctactagtataattgagttgtgccaagcaaggttagtttttactctcnnnnnnngaaagagaataatttttactcagaaaatcatat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
77073 |
ctgtctgtctactagtataattgagttgtgccaagcaaggttagtttttactctctttttttgaaagagaataatttttacacagaaaatcatat |
77167 |
T |
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