View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_28 (Length: 321)
Name: NF7950_high_28
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_28 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 6377106 - 6376909
Alignment:
| Q |
16 |
atggaagaccagattctgattacttgaaatggaagtggaaacctaatggttgtgaccttcctatattcaatccttttcagtttcttgaaattgtgagggg |
115 |
Q |
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| T |
6377106 |
atggaagaccagattctgattacttgaaatggaagtggaaacctaatggttgtgagcttcctatattcaatccttttcagtttcttgaaattgtgagggg |
6377007 |
T |
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| Q |
116 |
aaaatctatggcttttgttggagactcggttggtagaaatcagatgcagtccatgatttgccttctatcaagggtaactcttcatcctctaactatgc |
213 |
Q |
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| T |
6377006 |
aaaatctatggcttttgttggagactcagttggtagaaatcagatgcagtccatgatttgccttctatcaagggtaactcttcatcctctaactatgc |
6376909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 6368641 - 6368454
Alignment:
| Q |
16 |
atggaagaccagattctgattacttgaaatggaagtggaaacctaatggttgtgaccttcctatattcaatccttttcagtttcttgaaattgtgagggg |
115 |
Q |
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| T |
6368641 |
atggaagaccagattctgattacttgaaatggaagtggaaacctaatggttgtgagcttcctatattcaatccttttcaatttcttgaaattgtgagggg |
6368542 |
T |
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| Q |
116 |
aaaatctatggcttttgttggagactcggttggtagaaatcagatgcagtccatgatttgccttctatcaagggtaactcttcatcct |
203 |
Q |
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| T |
6368541 |
aaaatctatggcttttgttggagactcagttggtagaaatcagatgcagtccatgatttgcctactatcaagggtaacacttcatcct |
6368454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 6557866 - 6557755
Alignment:
| Q |
81 |
ttcaatccttttcagtttcttgaaattgtgaggggaaaatctatggcttttgttggagactcggttggtagaaatcagatgcagtccatgatttgccttc |
180 |
Q |
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|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||| |||| |
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| T |
6557866 |
ttcaatccttttcaatttcttgaaattgttagaggaaaatctatggcttttgttggagattctgttggtagaaatcacatgcagtcattgatttgtcttc |
6557767 |
T |
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| Q |
181 |
tatcaagggtaa |
192 |
Q |
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| T |
6557766 |
tatcaagggtaa |
6557755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 77 - 1
Alignment:
| Q |
16 |
atggaagaccagattctgattacttgaaatggaagtggaaacctaatggttgtgaccttcctatattcaatcctttt |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
77 |
atggaagaccagattctgattacttgaaatggaagtggaaacctaatggttgtgagcttcctatattcaatcctttt |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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