View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_29 (Length: 320)
Name: NF7950_high_29
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10550799 - 10551099
Alignment:
| Q |
1 |
aaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagatcaacccatat |
100 |
Q |
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| T |
10550799 |
aaaggaagtgagtttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagatcaacccatat |
10550898 |
T |
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| Q |
101 |
cactgactcttgagcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattcactgtgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10550899 |
cactgactcttgagcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattcactgtgattt |
10550998 |
T |
|
| Q |
201 |
aaagcctgaaaatattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtcgctctgacgcag |
300 |
Q |
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| T |
10550999 |
aaagcctgaaaatattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtcgctctgacgcag |
10551098 |
T |
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| Q |
301 |
a |
301 |
Q |
| |
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| |
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| T |
10551099 |
a |
10551099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 19606044 - 19605988
Alignment:
| Q |
16 |
aaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatccc |
72 |
Q |
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| T |
19606044 |
aaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatccc |
19605988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 10740881 - 10740824
Alignment:
| Q |
13 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatc |
70 |
Q |
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| T |
10740881 |
tttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatggttgcatc |
10740824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 10565054 - 10565112
Alignment:
| Q |
13 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
71 |
Q |
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| T |
10565054 |
tttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatggttgcatcc |
10565112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 10604779 - 10604837
Alignment:
| Q |
13 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcc |
71 |
Q |
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| T |
10604779 |
tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcc |
10604837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 10717122 - 10717065
Alignment:
| Q |
13 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatc |
70 |
Q |
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| T |
10717122 |
tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatc |
10717065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 10611737 - 10611797
Alignment:
| Q |
13 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatccca |
73 |
Q |
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|||||||| || || ||||| ||||||| |||||||| ||||||| | ||||||||||||| |
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| T |
10611737 |
tttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatccca |
10611797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 31467344 - 31467069
Alignment:
| Q |
13 |
tttaaagctcttgtatttgagtacatgagaaatggaaacttagaaaattggttgcatcccacaactggaattacagatcaacccatatcactgactcttg |
112 |
Q |
| |
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|||||||||||||| || |||||||||| ||| |||| |||||||| |||||||||||| ||| | |||| ||| || | | | || ||| ||| | |
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| T |
31467344 |
tttaaagctcttgttttcgagtacatgaaaaacggaagcttagaaagttggttgcatccagcaaaagaaattgcaggtccagaaaaaacattgaatctag |
31467245 |
T |
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| Q |
113 |
agcaaaggttaaatattattactgatgttgcgtcagcattttgttatcttcattacgaatgcgagcaacctgtcattcactgtgatttaaagcctgaaaa |
212 |
Q |
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||||||||||||||||||| ||| ||||| || |||||| |||||||||| | ||||| |||||||||||||||| ||||||||||||||| || |
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| T |
31467244 |
cacaaaggttaaatattattattgacgttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaa |
31467145 |
T |
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| Q |
213 |
tattcttcttaatgacatcatggtagctcaagtgagtgattttgggttagcaaagttgctctcaagtgttggagtc |
288 |
Q |
| |
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|||||||| |||| ||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
31467144 |
cgttcttcttgatgattctatggtagctcatgtgagtgattttggcatagcaaagttgcttccaagtattggagtc |
31467069 |
T |
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