View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7950_high_30 (Length: 319)

Name: NF7950_high_30
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7950_high_30
NF7950_high_30
[»] chr3 (1 HSPs)
chr3 (4-302)||(18557047-18557345)
[»] scaffold0438 (1 HSPs)
scaffold0438 (23-228)||(3408-3616)
[»] chr8 (2 HSPs)
chr8 (18-228)||(16083020-16083233)
chr8 (23-61)||(26908265-26908303)
[»] scaffold0023 (1 HSPs)
scaffold0023 (54-156)||(147035-147137)
[»] chr7 (1 HSPs)
chr7 (224-266)||(25951150-25951192)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 4 - 302
Target Start/End: Original strand, 18557047 - 18557345
Alignment:
Q  4 tcccatcaaatcgtcgtttgatgaaaatcaattcggaagcatggcagcaacctcgccgataagaagttattttgtcgccgccatgcttgcacctcgtccc 103  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  18557047 tcccatcaaatcgtcgtttgatgaaaatcaattcagaagcatggcagcaacctcgccgataagaagttattccgtcgccgccatgcttgcacctcgtccc 18557146  T
Q  104 gttctcacaaaaagaaatcacttccgaggctatacatggcaaagtcagaatcgctacaataatgaaagcaggcttgttagtatcccttcagtcaaagggg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18557147 gttctcacaaaaagaaatcacttccgaggctatacatggcaaagtcagaatcgctaaaataatgaaagcaggcttgttagtatcccttcagtcaaagggg 18557246  T
Q  204 aatcggcactcaacaggtttcaccgctgaagcttaactagggttgcgtagtgctttaatttttcgagagaacatccagtttggctgctatggacactaa 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18557247 aatcggcactcaacaggtttcaccgctgaagcttaactagggttgcgtagtgctttaatttttcgagagaacatccagtttggctgctatggacactaa 18557345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 3616 - 3408
Alignment:
Q  23 gatgaaaatcaattcggaagcatggcagcaacctcgcc---gataagaagttattttgtcgccgccatgcttgcacctcgtcccgttctcacaaaaagaa 119  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||||||| |||||||  || | ||||||||||||||     
T  3616 gatgaaaatcaattcggaagcatggcagcaacctcgccaccgataagaagttgtttcgtcgccgccatgcctgcacctaatctcattctcacaaaaagag 3517  T
Q  120 atcacttccgaggctatacatggcaaagtcagaatcgctacaataatgaaagcaggcttgttagtatcccttcagtcaaaggggaatcggcactcaacag 219  Q
      |||||| || |||||||| || ||||||| |||| |||||||||||||||||||||||| |  || |||||| || |||| |||||| |||| ||||     
T  3516 gccacttctgaagctatacaaggaaaagtcaaaatcactacaataatgaaagcaggcttgtgaaaattccttcaatcgaaggagaatcgacacttaacat 3417  T
Q  220 gtttcaccg 228  Q
    |||||||||    
T  3416 gtttcaccg 3408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 16083233 - 16083020
Alignment:
Q  18 cgtttgatgaaaatcaattcggaagcatggcagcaacctcgccga---taagaagttattttgtcgccgccatgcttgcacctcgtcccgttctcacaaa 114  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||   ||||||||| ||| |||||| |||| | |||||||| || | ||||||||||    
T  16083233 cgttggatgaaaatcaattcggaagcaaggcaacaacctcgccgacgataagaagttgtttcgtcgccaccatacctgcacctcatctcattctcacaaa 16083134  T
Q  115 aagaaatcacttccgaggctatacatggcaaagtcagaatcgctacaataatgaaagcaggcttgttagtatcccttcagtcaaaggggaatcggcactc 214  Q
    |||| | |||||| || |||||||| |||||||||| |||||||||||||||||||| |||||||| |  || |||||| || |||| |||||| ||||     
T  16083133 aagagaccacttctgaagctatacaaggcaaagtcaaaatcgctacaataatgaaagaaggcttgtgaaaattccttcaatcgaaggagaatcgacactt 16083034  T
Q  215 aacaggtttcaccg 228  Q
    || |||||||||||    
T  16083033 aataggtttcaccg 16083020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 26908303 - 26908265
Alignment:
Q  23 gatgaaaatcaattcggaagcatggcagcaacctcgccg 61  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26908303 gatgaaaatcaattcggaagcatggcagcaacctcgccg 26908265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 147035 - 147137
Alignment:
Q  54 cctcgccgataagaagttattttgtcgccgccatgcttgcacctcgtcccgttctcacaaaaagaaatcacttccgaggctatacatggcaaagtcagaa 153  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  147035 cctcgccgataagaagttattccgtcgccgccatgcctgcacctcgtcccgatctcacaaaaagaaatcacttccgaggctatagatggcgaagtcagaa 147134  T
Q  154 tcg 156  Q
    |||    
T  147135 tcg 147137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 25951192 - 25951150
Alignment:
Q  224 caccgctgaagcttaactagggttgcgtagtgctttaattttt 266  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  25951192 caccgctgaaacttaactagggttgcgtagtgctttaattttt 25951150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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