View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7950_high_40 (Length: 252)

Name: NF7950_high_40
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7950_high_40
NF7950_high_40
[»] chr2 (3 HSPs)
chr2 (198-235)||(2047693-2047730)
chr2 (45-108)||(2047843-2047905)
chr2 (1-37)||(2047946-2047982)
[»] chr1 (2 HSPs)
chr1 (1-72)||(26583630-26583701)
chr1 (1-37)||(14090579-14090615)
[»] chr4 (2 HSPs)
chr4 (1-37)||(20964428-20964464)
chr4 (1-37)||(36047235-36047271)
[»] chr5 (2 HSPs)
chr5 (1-81)||(15898086-15898165)
chr5 (1-29)||(42818849-42818877)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-37)||(8088-8123)
[»] chr8 (2 HSPs)
chr8 (1-37)||(14689897-14689933)
chr8 (1-37)||(38908763-38908799)
[»] chr7 (1 HSPs)
chr7 (1-37)||(25778674-25778710)
[»] chr6 (1 HSPs)
chr6 (1-37)||(4552839-4552875)
[»] chr3 (1 HSPs)
chr3 (1-37)||(46194340-46194376)


Alignment Details
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 2047730 - 2047693
Alignment:
Q  198 gtttcataattgaaacttaattattatggtggtggaac 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2047730 gtttcataattgaaacttaattattatggtggtggaac 2047693  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 2047905 - 2047843
Alignment:
Q  45 gcaaatagatcagttattataggacggaagggagtaagtttttatgatgatttgttcaatcaat 108  Q
    |||||| | ||| ||||||||| ||||| ||||||||||||||||||| |||||| ||||||||    
T  2047905 gcaaatgggtcaattattatagaacgga-gggagtaagtttttatgataatttgtgcaatcaat 2047843  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2047982 - 2047946
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  2047982 ttgaaaagtgaaatagatcaatttttctgaaacaata 2047946  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26583701 - 26583630
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaatannnnnnngcaaatagatcagttattataggacgga 72  Q
    |||||||||||||| ||||||||||| ||||||||||       |||||||| ||||||||||| |||||||    
T  26583701 ttgaaaagtgaaatgggtcaatttttttgagacaatatttttttgcaaatagctcagttattatgggacgga 26583630  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14090615 - 14090579
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  14090615 ttgaaaaatgaaattggtcaatttttctgagacaata 14090579  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20964428 - 20964464
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20964428 ttgaaaagtgaaataggtcaatttttctgggacaata 20964464  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36047235 - 36047271
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    ||||||||||||||  |||||||||||||||||||||    
T  36047235 ttgaaaagtgaaatgagtcaatttttctgagacaata 36047271  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15898165 - 15898086
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaatannnnnnngcaaatagatcagttattataggacggaagggagtaa 81  Q
    ||||||||||||||| |||||||||||||| ||||||       |||||||| ||||||||||| |||  |||||||||||    
T  15898165 ttgaaaagtgaaataagtcaatttttctgaaacaatatttttttgcaaatagctcagttattatggga-tgaagggagtaa 15898086  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42818877 - 42818849
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctg 29  Q
    |||||||||||||||||||||||||||||    
T  42818877 ttgaaaagtgaaataggtcaatttttctg 42818849  T

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Target: scaffold0155 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8088 - 8123
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  8088 ttgaaaagtgaaataggtcaattttt-tgagacaata 8123  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14689933 - 14689897
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    |||||||||||||| |||||||||||||| |||||||    
T  14689933 ttgaaaagtgaaatgggtcaatttttctgggacaata 14689897  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38908799 - 38908763
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  38908799 ttgaaaagtgaaatagatcaatttttttgagacaata 38908763  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25778710 - 25778674
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  25778710 ttgaaaagtgaaataagtcaatttttttgagacaata 25778674  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4552875 - 4552839
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    ||||||||||||||  |||||||||||||||||||||    
T  4552875 ttgaaaagtgaaatgagtcaatttttctgagacaata 4552839  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46194340 - 46194376
Alignment:
Q  1 ttgaaaagtgaaataggtcaatttttctgagacaata 37  Q
    |||||||||||||| |||||||||||||| |||||||    
T  46194340 ttgaaaagtgaaatgggtcaatttttctgggacaata 46194376  T

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