View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_43 (Length: 231)
Name: NF7950_high_43
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 22817681 - 22817494
Alignment:
| Q |
25 |
gtgaatttgcttcttccaccatttaagttgcttttaattcgttaattaactttgttaaattgtaattaaaagagtgattttagattctaatatgagtaac |
124 |
Q |
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| T |
22817681 |
gtgaatttgcttcttccaccatttaagttgcttt-aattcgttaattaactttgttaaattgcaattaaaagggtgattttagattctaatatgagtaac |
22817583 |
T |
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| Q |
125 |
aattgccaaaattctggtactagtcataatattagaggtttaatctccaacgctggtgctggtgctgctgctggtaattttttgttctt |
213 |
Q |
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| T |
22817582 |
aattgccaaaattctggtactagtcataatatcagaggtttaatctccaacgctggtgctggtgctgctgctggtaattttttgttctt |
22817494 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 53687377 - 53687423
Alignment:
| Q |
60 |
aattcgttaattaactttgttaaattgtaattaaaagagtgatttta |
106 |
Q |
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| T |
53687377 |
aattcgttaattaactttgttaaattgcaataaaaagggtgatttta |
53687423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 24994328 - 24994282
Alignment:
| Q |
60 |
aattcgttaattaactttgttaaattgtaattaaaagagtgatttta |
106 |
Q |
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|||| |||||||||||||||||||||| ||| ||||| ||||||||| |
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| T |
24994328 |
aattagttaattaactttgttaaattgcaataaaaagggtgatttta |
24994282 |
T |
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