View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_5 (Length: 616)
Name: NF7950_high_5
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Complemental strand, 8757422 - 8756819
Alignment:
| Q |
19 |
cttgattctgtaatgcttcgacaaattgccacattacctttagccaaatgccatagagctcttgctgccatttccttcatacttgccttagtctcagcat |
118 |
Q |
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| T |
8757422 |
cttgattctgtaatgcttcgacaaattgccacattacctttagccaaatgccatagagctcttgctgccatttccttcatacttgccttagtctcagcat |
8757323 |
T |
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| Q |
119 |
cttcagattcccttcccttcatgttaatccccgaatgcgaataatttctctgatgattattatgatttccttgcttcccaccatcattaccattaccatt |
218 |
Q |
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| T |
8757322 |
cttcagattcccttcccttcatgttaatccccgaatgcgaataatttctctgatgattattatgatttccttgcttcccaccatcattaccattaccatt |
8757223 |
T |
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| Q |
219 |
acca------agtccattaccattaggagtattggaattggccaaaatgttctgattttgatttgcttcatttccttcattgggctgcttggaagcagca |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8757222 |
accattaccgagtccattaccattaggagtattggaattggccaaaatgttctgattttgatttgcttcatttccttcattgggctgcttggaagcagca |
8757123 |
T |
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| Q |
313 |
tgaattgccatagtacttgtgatcactctatgcagatttcttggtctttcacctaatggatgatgcgatacacgaccatgtttattgccaccaccaacaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8757122 |
tgaattgccatagtacttgtgatcactctatgcagatttcttggtctttcacctaatggatgatgtgatacacgaccatgtttattgccaccaccaacaa |
8757023 |
T |
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| Q |
413 |
caacaccatcttcattttcagttcccttcttgggattaagattagagctagaattattattattactagccataacaacagcggcgtgaatcgaattcgc |
512 |
Q |
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| T |
8757022 |
caacaccatcttcattttcagttcccttcttgggattaagattagagctagaattattattattactagccataacaacagcggcgtgaatcgaattcgc |
8756923 |
T |
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| Q |
513 |
tttcatactaacaatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctgagcaaaaagttcc |
612 |
Q |
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| T |
8756922 |
tttcatactaacaatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctgagcaaaaagttcc |
8756823 |
T |
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| Q |
613 |
tgac |
616 |
Q |
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| T |
8756822 |
tgac |
8756819 |
T |
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Back To:
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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 518 - 607
Target Start/End: Original strand, 32031485 - 32031574
Alignment:
| Q |
518 |
tactaacaatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctgagcaaaaa |
607 |
Q |
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| T |
32031485 |
tactaacaattgcatatttactatgttcttgaacagtttcaaaagcaatgtgactcacaagcaacctaacaatattatgctgagcaaaaa |
32031574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 606
Target Start/End: Original strand, 28036238 - 28036319
Alignment:
| Q |
525 |
aatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctgagcaaaa |
606 |
Q |
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| T |
28036238 |
aatagaatacttactatgttcttgaatggtttcaaaagcaagatgactaacaagcaaacgaatagcattattctgagcaaaa |
28036319 |
T |
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