View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_high_9 (Length: 484)
Name: NF7950_high_9
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 59 - 484
Target Start/End: Complemental strand, 45066715 - 45066303
Alignment:
| Q |
59 |
gcattgataatctacatattactagtgaatcaatctaacattttcaatcatccaattccttttctaatgcaagcaagagttattccaattatccaattcc |
158 |
Q |
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| T |
45066715 |
gcattgataatctacatattactagtgaatcaatctaacattttcaatcatccaattccttttctaatgcaagcaagagttattccaattatccaattcc |
45066616 |
T |
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| Q |
159 |
ttttgtatatcaagaaagacttattttatgattttcaatgtttacaacaatattgagataagatacgagcttcatatagatgacattattgattattgtt |
258 |
Q |
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| T |
45066615 |
ttttgtacatcaagaaagacttattttatgattttcaatgtttacaacaatattgagataagatacgagcttcatatagatgacattattg-------tt |
45066523 |
T |
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| Q |
259 |
atttagattacgaataaactgtaaaagtttacagcttaattatagctattctcataaccaattcactagcttatcattgaaaaagaatttactatttata |
358 |
Q |
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| T |
45066522 |
atttagattacgaataaaccgtaaaagtttacagctta----tagctattctcataaccaattcactagcttatcattgaaaaagaatttactatttata |
45066427 |
T |
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| Q |
359 |
ttatccctcatatagtactctatttgatatgtacaaagcagcaacactttgacgcgcggcttggcgcgccacatgtcatggagcggatcacacttcagtg |
458 |
Q |
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| T |
45066426 |
ttatccctcatgtagtactctatttgatatgtacaaagcagcaacactttga--cgcggcttggcgcaccacatgtcatggagcggatcacacttcagtg |
45066329 |
T |
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| Q |
459 |
tcttttgggcgcgaactgcacctgac |
484 |
Q |
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| T |
45066328 |
tcttttgggcgcgaactgcacctgac |
45066303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45066988 - 45066928
Alignment:
| Q |
1 |
gtttttcttaatgagataatatggataaatatgaactttaaattatattgatatgatagca |
61 |
Q |
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| T |
45066988 |
gtttttcttaatgagataatatggataaatatgaactttaaattatattgatatgatagca |
45066928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 45546108 - 45546045
Alignment:
| Q |
318 |
aattcactagcttatcattgaaaaagaatttactatttatattatccctcatatagtactctat |
381 |
Q |
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| T |
45546108 |
aattaacttgcttatcattgaaaaagaatttcaaaattatattatccctcatataatattctat |
45546045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 45546337 - 45546230
Alignment:
| Q |
78 |
tactagtgaatcaa-tctaacattttcaatcatccaattccttttctaatgcaagcaagagttattccaattatccaattccttttgtatatcaagaaag |
176 |
Q |
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| T |
45546337 |
tactggtgaatcaaatctaaaaatttcaatgatccaattgtttttgtaatgcaagcaagaattatttgaatgatcctattcctaatgtaaatcaaggaaa |
45546238 |
T |
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| Q |
177 |
acttattt |
184 |
Q |
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|||||||| |
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| T |
45546237 |
acttattt |
45546230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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