View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_10 (Length: 569)
Name: NF7950_low_10
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 105 - 558
Target Start/End: Original strand, 47418691 - 47419144
Alignment:
| Q |
105 |
atacagagccttgattgacaccaataccctgttcaatttcaccagagttaacaataggcatcccatgcaatttagataaatgttcagttgacacagatca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47418691 |
atacagagccttgattgacaccaataccctgttcaatttcaccagagttaacaataggcatcccatgcaatttagataaatgttcagttgacacagatca |
47418790 |
T |
|
| Q |
205 |
acctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgtaaatca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47418791 |
acctcgcattcacttagaatcgttgaatgtactctgccgtattacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgtaaatca |
47418890 |
T |
|
| Q |
305 |
tgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47418891 |
tgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggctgtagttaccaccactgcttccatatgtcgatgggaaat |
47418990 |
T |
|
| Q |
405 |
gtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatt |
504 |
Q |
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| T |
47418991 |
gtatatgctgttgttgctgcttattaaggccttgcatgtgaatggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatt |
47419090 |
T |
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| Q |
505 |
tgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
558 |
Q |
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| T |
47419091 |
tgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
47419144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 189 - 558
Target Start/End: Original strand, 47390415 - 47390784
Alignment:
| Q |
189 |
cagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattct |
288 |
Q |
| |
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|||| |||||||||| |||| |||||| ||||| ||| ||||| | |||||| |||||| |||| |||||||||||||||||| || ||| ||||||| |
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| T |
47390415 |
cagtcgacacagatccacctggcattctcttaggatcattgaaagaactctgacgttctgcacctaagtgatttagaccaatgctcggatgtggaatttg |
47390514 |
T |
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| Q |
289 |
ccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttcca |
388 |
Q |
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| T |
47390515 |
ccttatgtgtgaatcatgaggatgaggttgtggtctgaaagatgatgatgaactagtggttgtcccggaaaaatggctgtagttaccaccactgcctcca |
47390614 |
T |
|
| Q |
389 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactgg |
488 |
Q |
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| T |
47390615 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttatttaggccttgcatgtgaacggcagatctttcagtttcttgactaacagcaatagaactgg |
47390714 |
T |
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| Q |
489 |
atgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
558 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47390715 |
atgttggtaattgatttgattgcactactcgaacatcatgttcctgaggttttttagcactgatgtccat |
47390784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 200 - 558
Target Start/End: Original strand, 47407540 - 47407898
Alignment:
| Q |
200 |
gatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgta |
299 |
Q |
| |
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|||| ||||||||||| ||||| ||| |||||| ||||||| ||||||||||||||||||| ||||||||| || ||| ||||||||||||| ||||| |
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| T |
47407540 |
gatccacctcgcattctcttaggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttgtgtg |
47407639 |
T |
|
| Q |
300 |
aatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgg |
399 |
Q |
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||| || | ||| |||||||||| |||||||||||||||||||| ||| |||| ||||| | || |||| ||||||||| || |||||| |||||| |
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| T |
47407640 |
aattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactgatttcatatggcgatgg |
47407739 |
T |
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| Q |
400 |
gaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaat |
499 |
Q |
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||||||||||| ||||||||||| |||| || |||||| ||||||| | || ||||||||||||||| ||| | ||||||| |||| ||||| |
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| T |
47407740 |
aaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgacaaatggtgttagaactagatggcagtaat |
47407839 |
T |
|
| Q |
500 |
tgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
558 |
Q |
| |
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||| ||| || ||| || |||||||||||||||||| |||||||| ||| |||||||| |
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| T |
47407840 |
tgagttggttccactgcttgaacatcatgttcctgagattttttagtactaatgtccat |
47407898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 317 - 558
Target Start/End: Original strand, 47421362 - 47421603
Alignment:
| Q |
317 |
tgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgtt |
416 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||| |||| |||| | ||||||| || |||||| | |||||||||| ||||| |||| |
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| T |
47421362 |
tgtggtctgagagatgataatgaaccagtgattgtccccaaaaaagggttaaagttgcaaccactgatttcatatggcaatgggaaatgaatatgttgtt |
47421461 |
T |
|
| Q |
417 |
gttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgac |
516 |
Q |
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||||||| |||| || |||||| || ||| | || ||||||||||||||||||| | |||||||||||| | |||||||| ||| || ||| || |
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| T |
47421462 |
gttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttcttgactaatggtgttagaactggatggtagtaattgagttggttccactac |
47421561 |
T |
|
| Q |
517 |
tcgaacatcatgttcctgaggttttttagcactgatgtccat |
558 |
Q |
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| T |
47421562 |
tcgaacatcatgttcctgagattttttagcactgatgtccat |
47421603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 47417817 - 47417904
Alignment:
| Q |
18 |
tgtggtgcagtacgtcctgtcccatggtccctggtgcttcttgctgttgctgcttagcttgttgctcgtgtggtggaacctgattcta |
105 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47417817 |
tgtggtgcagtacgtcctgtcccatggtccccggtgcttcttgctgttgctgcttagcttgttgctcgtgtggtggaacctgattcta |
47417904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 47390197 - 47390277
Alignment:
| Q |
106 |
tacagagccttgattgacaccaataccctgttcaatttcaccagagttaacaataggcatcccatgcaatttagataaatg |
186 |
Q |
| |
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||||| ||||||||||| |||| ||||||||||| ||| |||||| |||||| ||||| ||||||||| ||||||||||| |
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| T |
47390197 |
tacagtgccttgattgataccactaccctgttcattttgaccagaattaacagaaggcaacccatgcaacttagataaatg |
47390277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 47407362 - 47407436
Alignment:
| Q |
112 |
gccttgattgacaccaataccctgttcaatttcaccagagttaacaataggcatcccatgcaatttagataaatg |
186 |
Q |
| |
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||||||||||||| || |||||||||| ||| |||||| |||||| ||||| ||||||||||||||||||||| |
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| T |
47407362 |
gccttgattgacatcaccaccctgttcattttgaccagaattaacagaaggcaacccatgcaatttagataaatg |
47407436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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