View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_12 (Length: 540)
Name: NF7950_low_12
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Complemental strand, 42769082 - 42768560
Alignment:
| Q |
18 |
tattcaaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatagaggtctttatgttcaaggctactcaccaaccatt |
117 |
Q |
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| T |
42769082 |
tattcaaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatagaggtctttatgttcaaggctactcaccaaccatt |
42768983 |
T |
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| Q |
118 |
catccaacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcctcatcatctcaacacactgacctcacaatgttaa |
217 |
Q |
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| T |
42768982 |
catccaacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcctcatcatctcaacacactgacctcacaatgttaa |
42768883 |
T |
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| Q |
218 |
gagtgattcatggtgtcctaaatgcaatatcttggggtatacttttaccaacaggagcgataacagcacgttatcttcgacactttcagacattaggccc |
317 |
Q |
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| T |
42768882 |
gagtgattcatggcgtcctaaatgcaatatcttggggtatacttttaccaacaggagcgataacagcacgttatcttcgacactttcagacattaggccc |
42768783 |
T |
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| Q |
318 |
ttcatggttctatgctcatgcaggaatacaaatgtttggttttattcttggaaccgttgggtttggtattggtattcaactcgggaaaatgacgccagga |
417 |
Q |
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| T |
42768782 |
ttcatggttctatgctcatgcaggaatacaaatgtttggttttattcttggaaccgttgggtttggtattggtattcaactcgggaaaatgacgccagga |
42768683 |
T |
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| Q |
418 |
gttgagtacggactccacaggaagctcggaatagcggtgttttgcctcggagctttgcagactttggcattgttgtttaggccaaatactacgaacaagt |
517 |
Q |
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| T |
42768682 |
gttgagtacggactccacaggaagctcggaatagcggtgttttgcctcggagctttgcagactttggcattgttgtttaggccaaatactacgaacaagt |
42768583 |
T |
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| Q |
518 |
ttaggaagtattggaaatcttac |
540 |
Q |
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| T |
42768582 |
ttaggaagtattggaaatcttac |
42768560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 22 - 536
Target Start/End: Original strand, 2452450 - 2452958
Alignment:
| Q |
22 |
caaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatagaggtctttatgttcaaggctactcaccaaccattcatc |
121 |
Q |
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| T |
2452450 |
caaatctatgccaaattcaaactagaatcaaacaaaaccaaaatccaccttgtttggaatcgaggactttatgttcaaggctactcgcctactattcatc |
2452549 |
T |
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| Q |
122 |
caacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcctcatcatctcaacacactgacctcacaatgttaagagt |
221 |
Q |
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| T |
2452550 |
caaccacctccactgatctctcttccattgccaccttggacgttttgtcaggttcatccgc----tcgtc--aacacacagaccttacaatgctgagagt |
2452643 |
T |
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| Q |
222 |
gattcatggtgtcctaaatgcaatatcttggggtatacttttaccaacaggagcgataacagcacgttatcttcgacactttcagacattaggcccttca |
321 |
Q |
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| T |
2452644 |
gattcacggtactttgaatgccatctcatggggtattcttttgccgatgggagctataactgcacgttactttaggcatattcaatcactaggtcctgca |
2452743 |
T |
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| Q |
322 |
tggttctatgctcatgcaggaatacaaatgtttggttttattcttggaaccgttgggtttggtattggtattcaactcgggaaaatgacgccaggagttg |
421 |
Q |
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||||||||||||||||||||||||||| |||||| ||| ||||||||||| || ||||| | ||||| ||||| || ||| | || | |||||||| | |
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| T |
2452744 |
tggttctatgctcatgcaggaatacaattgtttgctttcattcttggaactgtggggttcgcaattggcattcaccttgggcagttgtctccaggagtgg |
2452843 |
T |
|
| Q |
422 |
agtacggactccacaggaagctcggaatagcggtgttttgcctcggagctttgcagactttggcattgttgtttaggccaaatactacgaacaagtttag |
521 |
Q |
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| T |
2452844 |
agtatagcctccacaggaagcttggagtcgccgtgttttgccttggagccttgcagactttagcgttgttgtttaggccaaacgctaggaacaagttcag |
2452943 |
T |
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| Q |
522 |
gaagtattggaaatc |
536 |
Q |
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| T |
2452944 |
gaagtattggaaatc |
2452958 |
T |
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