View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_13 (Length: 528)
Name: NF7950_low_13
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 41 - 514
Target Start/End: Original strand, 51402057 - 51402528
Alignment:
| Q |
41 |
aaaggagtaattaatagttaattagttacatttaatttgaaaatgctgaatatagtaaagaaacaaagtcaaaagataaacaccacacgtagaaaagcag |
140 |
Q |
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| T |
51402057 |
aaaggagtaattaatagttaattagttacatttaatttgaaaatgctgaatatagtaaagaaacaaagtcaaaagataaacaccacacgtagaaaagcag |
51402156 |
T |
|
| Q |
141 |
tatatggcatggttttcgtttaaatacttccgcttgttcttttgaatctcactactataagctgtgacattaacttctttctttggtcttatctgtaagc |
240 |
Q |
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| T |
51402157 |
tatatggcatggttttcgtttaaatacttccgcttgttcttttgaatctcactacta--agctgtgacattaacttctttctttggtcttatctgtaagc |
51402254 |
T |
|
| Q |
241 |
cacgtatataacgtaacaacaagctagttagtttctgatacccnnnnnnngctattatgtaactaacaccagtgtccttttttcttagtatcgatcgatc |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51402255 |
cacgtatataacgtaacaacaagctagttagtttctgataccctttttttgctattatgtaactaacaccagtgtccttttttcttagtatcgatcgatc |
51402354 |
T |
|
| Q |
341 |
gatcattcataataaccagcaacgttaatttttgaagcgatctgaataatcttggtggtgctgccgcgacaacatggcgacacctaatgtgacatgtcct |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51402355 |
gatcattcataataaccagcaacgttaatttttgaagcgatctgaataatcttggtggtgctgccgcgacaacatggcgacgcctaatgtgacatgtcct |
51402454 |
T |
|
| Q |
441 |
gcaccgatgaaagccacgtctaatggtgctttccaacacgaaaatcctctcgattatgcacttccgttgttgat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51402455 |
gcaccgatgaaagccacgtctaatggtgctttccaacacgaaaatcctctcgattatgcacttccgttgttgat |
51402528 |
T |
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