View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_17 (Length: 454)
Name: NF7950_low_17
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 3892585 - 3892147
Alignment:
| Q |
1 |
gaagaccagacacaaaaaaccaatgatacactaaaacaatttatgtaaatgtccatcaacatctagaaaatcattgaggtttctatcaaaaatttcaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3892585 |
gaagaccagacacaaaaaaccaatgatacactaaaacaatttatgtaaatgtccatcaacatctagaaaatcattgaggtttctatcaaaaatttcaaag |
3892486 |
T |
|
| Q |
101 |
tacagatcagacaacttgcaa-------ctcaacttgctgaaagtctaaggtttctatttttaaagtgattgaacttgggttaagactcaagagaatacg |
193 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3892485 |
tacagatcagacaacttgcaagttgcaactcaacttgctgaaagtctagggtttctatttttacagtgattgaacttgggttaagactcaagagaatacg |
3892386 |
T |
|
| Q |
194 |
agaaaactatgaactaatttatttgtttaaaattattttaatatgtctatagttttcattagatatacatacatgcaaacaaacctattattaggcttga |
293 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
3892385 |
agaaaactatgaactaatttatttgtttaaaattattttaatatgtctatagttttcattagatatatatacctgcaaacaaacctatta---ggcttga |
3892289 |
T |
|
| Q |
294 |
taaacttttttgtaagtctaagtctaacttaaaaaatgaacatgctaactatatttcttttaccattcatgtatatggtataataagtcaagaaaaattt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3892288 |
taaacttttttgtaagtctaagtctaacttaaaaaatgaacatgctaactatatttcttttaccattcatgtatatggtataataagtcaagaaaaattt |
3892189 |
T |
|
| Q |
394 |
aatatccctaaaaaatgttataaagtaaaactatatacttta |
435 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3892188 |
aatatccctaaaaaatgttataaagtaaaactatatacttta |
3892147 |
T |
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