View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_18 (Length: 450)
Name: NF7950_low_18
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 168 - 434
Target Start/End: Original strand, 637429 - 637695
Alignment:
| Q |
168 |
actaacaccacgacccatacaaggaacatccacaaaacaacaacgtatcaattagacgagttgcaatcagaaaccaaaccaattttagtagttcatcaga |
267 |
Q |
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| T |
637429 |
actaacaccacgacccatacaaggaacatccacaaaacaacaacgtatcaattagacgagttgcaatcagaaaccaaaccatttttagtagttcatcaga |
637528 |
T |
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| Q |
268 |
gtaaagggttctttacatgtataactcacgcaagatcaacttttcatataaaggtcattgcgttctcgtggacgctcaatcttgatagaattccaactcg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
637529 |
ctaaagggttctttacatgtataactcacgcaagatcaacttttcatataaaggtcattgcgttctcgtggacgctcaatcttgatagaatttcaactcg |
637628 |
T |
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| Q |
368 |
tgcaaatcttgcgattcgtaatgtattgcctccatatgggtctattacgtgtgtgttgtgtaataat |
434 |
Q |
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| T |
637629 |
tgcaaatcttgcgattcataatgtattgcctccatatgggtctattacgtgtgtgttgtgtaataat |
637695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 637327 - 637435
Alignment:
| Q |
16 |
aatatgtagccaattcaccaaaaacaattacaaaactacaccaagagaagaagcttatgtaatacttccttctcaccacaaataaggttccctacatata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
637327 |
aatatgtagccaattcaccaaaaacaattacaaaactacaccaagagaagaagcttatgtaatacttccttctcaccacaaataatgttcacgacatata |
637426 |
T |
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| Q |
116 |
tcgctaaca |
124 |
Q |
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| T |
637427 |
tcactaaca |
637435 |
T |
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