View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_19 (Length: 446)
Name: NF7950_low_19
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_19 |
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| [»] scaffold0564 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 115 - 432
Target Start/End: Complemental strand, 30736788 - 30736479
Alignment:
| Q |
115 |
tttaatatagttaaagataaaaatactataactttatggtgttacgagaaccacgaggtaactttgtctaatctatctatatcataacagtagtgctata |
214 |
Q |
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| T |
30736788 |
tttaatatagtta--gataaaaatactataactttatggtgttacgagaaccaccaggtaactttgtctaatctatctatatcataacagtggtgctata |
30736691 |
T |
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| Q |
215 |
tggtacgagagaaaaggccgatgaattgcacggtacactattttctatcctattttcatggattctttcaaattaaaaaataattaaagtcaaaatattc |
314 |
Q |
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| T |
30736690 |
tg-----agagaaaaggccgatgaattgcacggtacactattttctatcctattttcatggattctttcaaattaaaaaataattaaagtcaaaatattc |
30736596 |
T |
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| Q |
315 |
agagagaacagccttgaacaaccttaattgtcttcatcctgaagaccatccttgtcacgacgaactcactatattcatcatcaccattgccaatgttgtt |
414 |
Q |
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| T |
30736595 |
agagagaacagccttgaacaaccttaattgtcttcatcctgaagaccatccttgtcacgac-aactcactatattcatcatcaccattgccaatgttgtt |
30736497 |
T |
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| Q |
415 |
gctttaattgtcttcatc |
432 |
Q |
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| T |
30736496 |
gctttaattgtcttcatc |
30736479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 25616592 - 25616555
Alignment:
| Q |
27 |
aagatggagagcgagggtgtgagtttacggagcacatg |
64 |
Q |
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| T |
25616592 |
aagatggagagcgagggtgtgagtttaaggagcacatg |
25616555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 25628167 - 25628135
Alignment:
| Q |
21 |
ctcaataagatggagagcgagggtgtgagttta |
53 |
Q |
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| T |
25628167 |
ctcaataagatggagagcgagggtgtgagttta |
25628135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 4171 - 4136
Alignment:
| Q |
66 |
tttcttttcttttatactaggtatataacccgtgcg |
101 |
Q |
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| T |
4171 |
tttctcttcttttatactaggtatataacccgtgcg |
4136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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