View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_20 (Length: 410)
Name: NF7950_low_20
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 166 - 347
Target Start/End: Complemental strand, 9334189 - 9334007
Alignment:
| Q |
166 |
cttttgttagtgctgttgttattttcttattattactgtcattacttttctttt------gttcttagaatattccaataaagatggtgagcatgaggtt |
259 |
Q |
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| T |
9334189 |
cttttgttagtgctgttgttattttcttattattactgtcatcacttttctttttcttttgttcttagaatattccaataaagatagtgagcatgaggtt |
9334090 |
T |
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| Q |
260 |
tggcaagttcgtgcaatcaccattctgttagaacccttgtggtaggcagtagagagaatagttttctctcaactgaggagcttaggct |
347 |
Q |
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| T |
9334089 |
tggcaagttcatacaatcaccattctgttagaac-----aggtaggcagtagagagaatagttttctctcaactgaggagcttaggct |
9334007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 347
Target Start/End: Complemental strand, 9328874 - 9328708
Alignment:
| Q |
163 |
tggcttttgttagtgctgttgttattttcttattattactgtcattacttttcttttgttcttagaatattccaataaagatggtgagcatgaggtttgg |
262 |
Q |
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| T |
9328874 |
tggcttttgttattgctgctgttattttcttattattactgtcatcactcttcttttgttcttagaata--------aagatagtgagcatgagatttgg |
9328783 |
T |
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| Q |
263 |
caagttcgtgcaatcaccattctgttagaacccttgtggtaggcagtagagagaatagttttctctcaactgaggagcttaggct |
347 |
Q |
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| T |
9328782 |
caa----------tcaacattctgttagaacacttgtggtaggcagtagagagaatagttttctctcaaaagaggatcttaggct |
9328708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 9334404 - 9334321
Alignment:
| Q |
16 |
caaaagtgttatatttccaagaagacttgtattttgtttcaattctcagtatac---tactcatgtttgatatattgaaaatag |
96 |
Q |
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| T |
9334404 |
caaaattgttatatttccaagaagacttgtattttgtttcaattctcagtatactactactcatgtttgatatattgaaaatag |
9334321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 9333579 - 9333532
Alignment:
| Q |
344 |
ggcttgactcatgtgagagtgcaggttcttacattcactcttcatgat |
391 |
Q |
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| T |
9333579 |
ggcttgactcatgtgagagtgcaggttcttacattcactcttcatgat |
9333532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 9329057 - 9328989
Alignment:
| Q |
16 |
caaaagtgttatatttccaagaagacttgt-attttgtttcaattctcagtatactactcatgtttgatat |
85 |
Q |
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| T |
9329057 |
caaaagttttatttttccaacaagacttgttattttgtttcaattctga--atactactcatgtttgatat |
9328989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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