View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_21 (Length: 406)
Name: NF7950_low_21
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 54278635 - 54278248
Alignment:
| Q |
1 |
tgtggtgaggatctatggttggaaacaatgtaaacattttgggagagtaaaaattattatgggggttgaaagagnnnnnnntgagagaaattaatgtttg |
100 |
Q |
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| T |
54278635 |
tgtggtgaggatctatggttggaaacaatgtaaacattttgggagagtaaaaattattatgggggttgaaagagaaaaaaatgagagaaattaatgtttg |
54278536 |
T |
|
| Q |
101 |
ttcttgaaactcttttgtgtatcttgtaaagactcgttgataatgaattggaaaactgttctccctctaaacgttgatcaatttggactcaatgggtaaa |
200 |
Q |
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| T |
54278535 |
ttcttgaaactcttttgtgtatcttgtaaagactcgttgataatgaattggaaagttgttctccctctaaacgttgatcaatttggactcaatgggtaaa |
54278436 |
T |
|
| Q |
201 |
caagtttggtgtgtttgtgcctctactctttttattttatgctaatgctatggattgatggtgtggtttcattatacacataggtcgctagatgtgtgta |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54278435 |
caagtttggtgtgtttgtacctctactctttttattttatgctaatgctatggattgatggtgtggtttcattatacacataggtcgctagatgtgtgta |
54278336 |
T |
|
| Q |
301 |
ttgaatttattgttgcttagatcgttaaatttagtcgtcattaattgtttgtccgacacattttcttagcatgtttgattgaatttac |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54278335 |
ttgaatttattgttgcttagatcgttaaatttagtcgtcattaattgtttgtccgacacattttcttagcatgtttgattgaatttac |
54278248 |
T |
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