View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7950_low_22 (Length: 389)
Name: NF7950_low_22
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 35340846 - 35341201
Alignment:
| Q |
19 |
tttggagacaatctctcgtgaaaatgtttaattgtagttcaccatgtagaaaaaataaacattactttccactgaacccaatattagcagcattatatca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35340846 |
tttggagacaatctctcgtgaaaatgtttaattgtagttcaccatgtagaaaaaataaacattactttccacttaacccaatattagcagcattatatca |
35340945 |
T |
|
| Q |
119 |
taccagacaaacaattcatgttcaacaaacaagtgcagtagttttaaacttgcaccaaaccaatgtttgcgttagttagatgttcttgtaagataaggtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35340946 |
taccagacaaacaattcatgttcaacaaataagtgcagtagttttaaacttgcaccaaaccaatgtttgcgtta----gatgttcttgtaagataaggtt |
35341041 |
T |
|
| Q |
219 |
atagttaaggacatgtaagttatagatacctacttttgtgatcatgtaccacaatgatagtgaacaaacaaattcacaatttatattaagctcactccta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
35341042 |
atagttaaggacatgtaagttatagatacctacttttgtgatcatgtaccacaatgatagtgaacaaacaaattcacaatttatattaggctcgctccta |
35341141 |
T |
|
| Q |
319 |
aaccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttcat |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341142 |
aaccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttcat |
35341201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 193 - 378
Target Start/End: Complemental strand, 15492885 - 15492700
Alignment:
| Q |
193 |
gttagatgttcttgtaagataaggttatagttaaggacatgtaagttatagatacctacttttgtgatcatgtaccacaatgatagt-gaacaaacaaat |
291 |
Q |
| |
|
|||||||||||||||| |||||||||||| | | ||||||| |||| ||| ||| ||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
15492885 |
gttagatgttcttgtaggataaggttatactcacggacatgcgagttttaggtacttacttttgtgatcatgtaccacaataatagtctaacaaacaaat |
15492786 |
T |
|
| Q |
292 |
tcacaatttatattaagctcactcctaaaccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttcat |
378 |
Q |
| |
|
|||||||| || ||||||||||| || ||||||||||||| |||| |||||| |||| ||||||| || || ||||| |||||||| |
|
|
| T |
15492785 |
tcacaattcatgttaagctcactgcttaaccatttaattt-ctccaacttacagagctgcatcaccgccgcctgtttgctgtttcat |
15492700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University