View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_29 (Length: 354)
Name: NF7950_low_29
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 37493594 - 37493916
Alignment:
| Q |
15 |
tatcgtacataattagagggccattcgtgctacataaaagaagagggccattcgtgtccaggactttttcagctaaaaacaaaatgtttatcagatttat |
114 |
Q |
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| T |
37493594 |
tatcgtacataattagagggccattcgtgttacataaaagaagagggccattcgtgtccaggactttttcagctaaaaacaaaatgtttaccagatttat |
37493693 |
T |
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| Q |
115 |
tcnnnnnnnn-tgtttaccagataaagaaaaatatccagatatttaaaggtattatgaaatccaattatattatctttacctgaacggttgtaatcggat |
213 |
Q |
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| T |
37493694 |
tcaaaaaaaaatgtttaccagataaagaaaaatatccagatatttaaaggtattatgaaatccaattatattatctttacctgaacggttgtaatcggat |
37493793 |
T |
|
| Q |
214 |
gacattgtctgtgtccccttgcaaagttcgtttagttgtgattcaatattacacagaaataatgttgcttcattgaggggcttggataactcctctttgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37493794 |
gacattgtctgtgtccccttgcaaagttcgtttagttgtgattcaatattacacagaaataatgttgcttcattgaggggcttggataactcctctttgt |
37493893 |
T |
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| Q |
314 |
atctatgaagaacttcacagtat |
336 |
Q |
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||||||||||||||||||||||| |
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| T |
37493894 |
atctatgaagaacttcacagtat |
37493916 |
T |
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