View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_30 (Length: 352)
Name: NF7950_low_30
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 38 - 338
Target Start/End: Original strand, 41089745 - 41090043
Alignment:
| Q |
38 |
ccttctaaataaagaccatgattgaacctgtgtttgagttaagggtacttcaatatttttattaatcaatttttcaattagctggatcgatggttgaaaa |
137 |
Q |
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| T |
41089745 |
ccttctaaataaagaccgtgattgaacctgtgtttgagttaagggtacttcaatatttttattaatcaatttttcaattagttggatcgatggttgaaaa |
41089844 |
T |
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| Q |
138 |
ttgaactatgattgttgttacaccctatgttcaagcgttttcctttcttcccatcaagtagctagaaattcaaatttgtaaggtgaataagtagagtgat |
237 |
Q |
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| T |
41089845 |
ttgaattatgattgttgttacaccctatgttcaagcgtttt-ctttcttcccat-aagtagctagaaattcaaatttgaaaggtgaataagtagagtgat |
41089942 |
T |
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| Q |
238 |
cagactccgcacctgcatatattatataatattgctatcaactagtaagctaaactcataggactcaagcatttttctactttaaaataagagttaaata |
337 |
Q |
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| T |
41089943 |
tagactccccacgtgcatatattatacaatatttctatcaattagtaagctaaactcataggactcaagcatttttctactttaaaataagatttaaata |
41090042 |
T |
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