View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7950_low_31 (Length: 349)
Name: NF7950_low_31
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_31 |
 | |
|
| [»] scaffold0012 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 334
Target Start/End: Original strand, 152939 - 153268
Alignment:
| Q |
5 |
gctttggaggttgttgatttgttctcatttagattttcatagttgtaccattgcgaattcgtagtttatattgtagattttcgatttcacgttatttcac |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
152939 |
gctttggagggtgttgatttgttctcatttagattttcatagttgtaccattgcgaattcgtagtttatattgtagattttcgatttcagataatttcac |
153038 |
T |
|
| Q |
105 |
gtcaatgaatttacaataaccatacaatgatctcctatcagtcatactacgtgtcaatctcttttagtatcgacttctagataaaccttcttcgatatat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
153039 |
gtcaatgaatttacaataaccatacaatgatctcctatcagtcatactacgtgtcaatctcttttagtatcgacttctagataaaccctcttcgatatat |
153138 |
T |
|
| Q |
205 |
caaaatccgtaaacaactaaggtgttgcagtctttgatatcgttctctatctatcacttgatttgcctttgaggctgcgtctttttattaggtttaatta |
304 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
153139 |
caaaatccataaacaactaaggtgttgcagtctttgatatctttctctatctatcacttgatttgcctttgaggctgcgtctttttattaggtttaatta |
153238 |
T |
|
| Q |
305 |
atgataatttcttcttctttagtacattct |
334 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |
|
|
| T |
153239 |
atgataattttttctgctttagtacattct |
153268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 160905 - 161004
Alignment:
| Q |
5 |
gctttggaggttgttgatttgttctcattt-agattttcatagttgtaccattgcgaattcgtagtttatattgtagattttcgatttcacgttatttca |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||| | |||||||||| |||| | ||| ||| ||||||||| | |||||||||||| ||||||| | |||||| |
|
|
| T |
160905 |
gctttggatgttgttgatttgttctcatagcatattttcatagctgtagcgttgggaactcgtagtttgtgttgtagattttcaatttcacatgatttca |
161004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 161073 - 161123
Alignment:
| Q |
104 |
cgtcaatgaatttacaataaccatacaatgatctcctatcagtcatactac |
154 |
Q |
| |
|
||||||||||||||| || ||||| || ||||||||||||||||||||||| |
|
|
| T |
161073 |
cgtcaatgaatttacgatgaccatgcattgatctcctatcagtcatactac |
161123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University