View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7950_low_32 (Length: 347)
Name: NF7950_low_32
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 71 - 336
Target Start/End: Complemental strand, 39600894 - 39600625
Alignment:
| Q |
71 |
gaaaaacaagaagttgaaaaagcatgacatggggtcaagatgtcttaaccataaagggtatagtctccatcttttattacaggaacagttccaaatggct |
170 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39600894 |
gaaaaacaagaagtagaaaaagtatgacatggggtcaagatgttttaaccataaagggtatagtctccatcttttattacaggaacagttccaaaaggct |
39600795 |
T |
|
| Q |
171 |
gcagattgtgaacaaaaaacattcatgagtcagaaaatgaataa--actttgaat--ccttttagcatagtactaaacaaagatgaacctgtaatttgag |
266 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39600794 |
gcagattatgaacaaaaaacatgcatgagtcagaaaatgaataatcaaaataaataaacttttagcatagtactaaacaaagatgaacctgtaatttgag |
39600695 |
T |
|
| Q |
267 |
gtactcaggatctttgtgttcaccctccaagacattaacagggacaacctcaaattcgattttcttctca |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39600694 |
gtactcaggatctttgtgttcaccctccaagacattaacagggacaacctcaaattcgattttcttctca |
39600625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 39611312 - 39611215
Alignment:
| Q |
88 |
aaaagcatgacatggggtcaagatgtcttaaccataaagggtatagtctccatcttttattacaggaacagttccaaatggctgcagattgtgaacaaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
39611312 |
aaaagcatgacatggggtcaagatgt-ttaaccataaagggtatagtctccatctttaataacaggaacatttccaaatggctgcagattatgaacaaa |
39611215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 242 - 336
Target Start/End: Complemental strand, 39611160 - 39611066
Alignment:
| Q |
242 |
aacaaagatgaacctgtaatttgaggtactcaggatctttgtgttcaccctccaagacattaacagggacaacctcaaattcgattttcttctca |
336 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
39611160 |
aacaaacatgaacctgtaatttgaggtactcaggatccttgtgttcacccttcaagacattaatagggacaacctcaaattctatttccttctca |
39611066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 39600924 - 39600893
Alignment:
| Q |
19 |
tttacaagctgtgaccatatcaaatatgtaga |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39600924 |
tttacaagctgtgaccatatcaaatatgtaga |
39600893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University