View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7950_low_33 (Length: 335)
Name: NF7950_low_33
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7950_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 18289503 - 18289199
Alignment:
| Q |
14 |
atattcccaactaaactaccctttaaattataaaaatgacaatgattattcatcatnnnnnnntaggacaaattgatatcttcataggcttttgaccaat |
113 |
Q |
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| T |
18289503 |
atattcccaactaaactaccctttaaattataaaaatgaaaatgattattcatcataaaaaaataggataaattgatatcttcataggcttttgaccaat |
18289404 |
T |
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| Q |
114 |
tatccaagtttactgcaacctctttaatcatgctatatatttgagtnnnnnnnntaacctcttcatatacttcatttctccaactaagatgtatttccaa |
213 |
Q |
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| T |
18289403 |
tatccaagtttactgcaacctctttaatcatgctatatatttgagtatagaaaataacctcttcatataattcatttctccaactaagatgtatttccaa |
18289304 |
T |
|
| Q |
214 |
aaccttattcaaatgtggcttatactcatcactaagaagcttattgcaataatcagtaacaaagcttaccagcttaggaacacttccatctgagggagga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18289303 |
aaccttattcaaatgtggcttatactcatcactaagaagcttattgcaataatcagtaacaaagcttaccagcttaggaacacttccatctgagggagga |
18289204 |
T |
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| Q |
314 |
caagt |
318 |
Q |
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||||| |
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| T |
18289203 |
caagt |
18289199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 1478490 - 1478189
Alignment:
| Q |
14 |
atattcccaactaaactaccctttaaattataaaaatgacaatgattattcatcatnnnnnnntaggacaaattgatatcttcataggcttttgaccaat |
113 |
Q |
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||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
1478490 |
atatttccaactaaagtaccctttaaattgtagaaatgacaatggttattcatcataaaaaaatatgacaaatttatatcttcataggcttttgaccaat |
1478391 |
T |
|
| Q |
114 |
tatccaagtttactgcaacctctttaatcatgctatatatttgagtnnnnnnnntaacctcttcatatacttcatttctccaactaagatgtatttccaa |
213 |
Q |
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|||||| || |||||||| || ||||| ||||||||||||||| || |||||||| ||| |||||||||||||||||||| ||||||||| |
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| T |
1478390 |
catccaaattaactgcaacttccttaattatgctatatatttgaccaacaaaaataccctcttcaaatagttcatttctccaactaagatatatttccaa |
1478291 |
T |
|
| Q |
214 |
aaccttattcaaatgtggcttatactcatcactaagaagcttattgcaataatcagtaacaaagcttaccagcttaggaacacttccatctgagggagga |
313 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||| |||||||| || ||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
1478290 |
aaccttattcaattgtggcttatactcatcactaagaagcctattacaataatcggtgacaaaacttaccaatttaggaacacttccatctgagggagga |
1478191 |
T |
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| Q |
314 |
ca |
315 |
Q |
| |
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|| |
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|
| T |
1478190 |
ca |
1478189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 14001995 - 14001923
Alignment:
| Q |
47 |
aaatgacaatgattattcatcatnnnnnnntaggacaaattgatatcttcataggcttttgaccaattatccaa |
120 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14001995 |
aaatgacaatgattattcatcataaaaaa-taggacaaattgatatcttcgtaggcttttgaccaatcatccaa |
14001923 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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