View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7950_low_35 (Length: 321)

Name: NF7950_low_35
Description: NF7950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7950_low_35
NF7950_low_35
[»] chr1 (1 HSPs)
chr1 (18-310)||(42661309-42661601)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 42661309 - 42661601
Alignment:
Q  18 acttcccttagacttcatcattttctccaaatcttgtttcatgctcagacactccttttcaagctcagaaactctatctttcatgtgatcaaaagctaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42661309 acttcccttagacttcatcattttctccaaatcttgtttcatgctcagacactccttttcaagctctgaaactctatctttcatgtgatcaaaagctaca 42661408  T
Q  118 acagggttgttatgtgttgtgtttccatcatttcttagcagagcaaggtttccactcagggttgttgagttttcaagagtgtcagaagcaaagaaccaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42661409 acagggttgttatgtgttgtgtttccatcatttcttagcagagcaaggtttccactcagggttgttgagttttcaagagtgtcagaagcaaagaaccaac 42661508  T
Q  218 ctgcaacagatgtgcgtagcttgagttgttcgaagaacaaaacttggacaacaacacgaagtggtagcctttcgttttgagctgcgtgtgtgc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42661509 ctgcaacagatgtgcgtagcttgagttgttcgaagaacaaaacttggacaacaacacgaagtggtagcctttcgttttgagctgcgtgtgtgc 42661601  T

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